LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
include/nsearch/Alphabet.h
include/nsearch/Database.h
include/nsearch/FileFormat.h
include/nsearch/Sequence.h
include/nsearch/SequenceReader.h
include/nsearch/SequenceWriter.h
include/nsearch/TextReader.h
include/nsearch/Utils.h
include/nsearch/Alignment/BandedAlign.h
include/nsearch/Alignment/Cigar.h
include/nsearch/Alignment/Common.h
include/nsearch/Alignment/ExtendAlign.h
include/nsearch/Alignment/SegmentPair.h
include/nsearch/Alnout/Writer.h
include/nsearch/Alphabet/DNA.h
include/nsearch/Alphabet/Protein.h
include/nsearch/CSV/Writer.h
include/nsearch/Database/GlobalSearch.h
include/nsearch/Database/HSP.h
include/nsearch/Database/Highscore.h
include/nsearch/Database/HitWriter.h
include/nsearch/Database/Kmers.h
include/nsearch/Database/Search.h
include/nsearch/FASTA/Reader.h
include/nsearch/FASTA/Writer.h
include/nsearch/FASTQ/QScore.h
include/nsearch/FASTQ/Reader.h
include/nsearch/FASTQ/Writer.h
include/nsearch/PairedEnd/Merger.h
include/nsearch/PairedEnd/Reader.h
npysearch/__init__.py
npysearch.egg-info/PKG-INFO
npysearch.egg-info/SOURCES.txt
npysearch.egg-info/dependency_links.txt
npysearch.egg-info/not-zip-safe
npysearch.egg-info/requires.txt
npysearch.egg-info/top_level.txt
src/_npysearch/Common.h
src/_npysearch/FileFormat.h
src/_npysearch/Filter.cpp
src/_npysearch/Filter.h
src/_npysearch/Merge.cpp
src/_npysearch/Merge.h
src/_npysearch/Search.cpp
src/_npysearch/Search.h
src/_npysearch/Stats.h
src/_npysearch/TextReader.cpp
src/_npysearch/WorkerQueue.h
src/_npysearch/winstd.h