Metadata-Version: 2.1
Name: nPYc
Version: 1.0.4
Summary: National Phenome Centre toolbox
Home-page: https://github.com/phenomecentre/npyc-toolbox
Author: National Phenome Centre
Author-email: phenomecentre@imperial.ac.uk
License: MIT
Platform: UNKNOWN
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.6
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: numpy (>=1.11.0)
Requires-Dist: scipy (>=0.17.1)
Requires-Dist: pandas (>=0.21.0)
Requires-Dist: matplotlib (>=1.5.1)
Requires-Dist: seaborn (>=0.8.0)
Requires-Dist: networkx (>=2.0)
Requires-Dist: statsmodels (>=0.6.1)
Requires-Dist: jinja2 (>=2.8)
Requires-Dist: plotly (>=2.0.0)
Requires-Dist: scikit-learn (>=0.18.1)
Requires-Dist: isatools (>=0.9.2)
Requires-Dist: lmfit (>=0.9.7)
Requires-Dist: cycler (>=0.10.0)
Requires-Dist: pyChemometrics (>=0.1)

Toolbox for preprocessing of metabolic profiling datasets
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.. image:: https://travis-ci.org/phenomecentre/nPYc-Toolbox.svg?branch=master
   :target: https://travis-ci.org/phenomecentre/nPYc-Toolbox

.. image:: https://readthedocs.org/projects/npyc-toolbox/badge/?version=latest
   :target: http://npyc-toolbox.readthedocs.io/en/latest/?badge=latest
   :alt: Documentation Status

.. image:: https://codecov.io/gh/phenomecentre/nPYc-Toolbox/branch/master/graph/badge.svg
   :target: https://codecov.io/gh/phenomecentre/nPYc-Toolbox

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The nPYc toolbox offers functions for the import, preprocessing, and QC of metabolic profiling datasets.

Documentation can be found on `Read the Docs <http://npyc-toolbox.readthedocs.io/en/latest/?badge=latest>`_.

Imports
 - Peak-picked LC-MS data (XCMS, Progenesis QI)
 - Raw NMR spectra (Bruker format)
 - Targeted datasets (TargetLynx, Bruker BI-LISA & BI-Quant-Ur)

Provides
 - Batch *&* drift correction for LC-MS datasets
 - Feature filtering by RSD and linearity of response
 - Calculation of spectral line-width in NMR
 - PCA of datasets
 - Visualisation of datasets

Exports
 - Basic tabular csv
 - `ISA-TAB <http://isa-tools.org>`_

The nPYc toolbox is `developed <https://github.com/phenomecentre/npyc-toolbox>`_ by the informatics team at `The National Phenome Centre <http://phenomecentre.org/>`_ at `Imperial College London <http://imperial.ac.uk/>`_.


