LICENSE
MANIFEST.in
README.md
setup.py
bin/notramp
notramp/__init__.py
notramp/amp_cov.py
notramp/defaults.py
notramp/map_trim.py
notramp/notramp_main.py
notramp/nta_aux.py
notramp/plot_amp_reads.py
notramp/version.py
notramp.egg-info/PKG-INFO
notramp.egg-info/SOURCES.txt
notramp.egg-info/dependency_links.txt
notramp.egg-info/entry_points.txt
notramp.egg-info/requires.txt
notramp.egg-info/top_level.txt
notramp/resources/ARTIC_v1_nCoV-2019.primer.bed
notramp/resources/ARTIC_v2_nCoV-2019.primer.bed
notramp/resources/ARTIC_v3_nCoV-2019.primer.bed
notramp/resources/ARTIC_v4.1_nCoV-2019.primer.bed
notramp/resources/ARTIC_v5.3.2_SARS-CoV-2_400.primer.bed
notramp/resources/artic_nCoV_scheme_v1-v4.json
notramp/resources/artic_nCoV_scheme_v5.3.2.json
notramp/resources/generic_scheme.json
notramp/resources/logging.conf
notramp/resources/minimal_scheme.json
notramp/resources/notramp_amplicon_coverage_large_test_data_thr30x.png
notramp/test_self/ARTIC_SARS-CoV-2_v5.3.2_400.primer.bed
notramp/test_self/ARTIC_v5.3.2_Amplicons_Wuhan1_reference.fasta
notramp/test_self/MN908947.3_SARS-CoV2_Wuhan-reference.fasta
notramp/test_self/artic_nCoV_scheme_v5.3.2.json