Metadata-Version: 2.1
Name: noise2read
Version: 0.0.75
Summary: Turn noise to read
Home-page: https://github.com/Jappy0/noise2read
Author: Penagyao Ping
Author-email: ping.pengyao@gmail.com
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Description-Content-Type: text/x-rst
License-File: LICENSE
Requires-Dist: biopython (==1.79)
Requires-Dist: xgboost (==1.6.1)
Requires-Dist: Xlsxwriter (==3.0.3)
Requires-Dist: tqdm (==4.64.0)
Requires-Dist: scikit-learn (==1.1.1)
Requires-Dist: networkx (==2.8.5)
Requires-Dist: pandas (==1.4.3)
Requires-Dist: optuna (==2.10.1)
Requires-Dist: matplotlib (==3.5.2)
Requires-Dist: mpire (>=2.5.0)
Requires-Dist: editdistance (==0.6.0)
Requires-Dist: imbalanced-learn (==0.9.1)
Requires-Dist: seaborn (>=0.12.1)

.. _noise2read-documentation:

.. image:: ./logo/logo.svg
   :align: center
   :target: https://noise2read.readthedocs.io/en/latest/

.. image:: https://readthedocs.org/projects/noise2read/badge/?version=latest
    :target: https://noise2read.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status

Turn 'noise' to signal: accurately rectify millions of erroneous short reads through graph learning on edit distances
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`noise2read <https://noise2read.readthedocs.io/en/latest/>`__, originated in a computable rule translated from PCR erring mechanism that: a rare read is erroneous if it has a neighboring read of high abundance, turns erroneous reads into their original state without bringing up any non-existing sequences into the short read set(<300bp) including DNA and RNA sequencing (DNA/RNA-seq), small RNA, unique molecular identifiers (UMI) and amplicon sequencing data.

Click `noise2read <https://noise2read.readthedocs.io/en/latest/>`__ to jump to its documentation
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