Metadata-Version: 2.4
Name: nnea
Version: 0.1.1
Summary: A biological inform neural network
Home-page: https://github.com/liuchuwei/nnea
Author: Chuwei Liu
Author-email: liuchw26@mail.sysu.edu.cn
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: license-file
Dynamic: requires-python
Dynamic: summary

### Install package
```shell
pip install nnea
```

### Clone the repository
```shell
git clone git@github.com:liuchuwei/nnea.git
```

### Load Immunotherapy Dataset

```shell
mkdir datsaets
mkdir factory
mkdir factory/tumor_immunotherapy
cd factory/tumor_immunotherapy
wget --referer="https://figshare.com/" \
--user-agent="Mozilla/5.0" \
-c "https://figshare.com/ndownloader/files/56402492" -O exp.txt
wget --referer="https://figshare.com/" \
--user-agent="Mozilla/5.0" \
-c "https://figshare.com/ndownloader/files/56402489" -O phe.txt 
python run.py dataload --config config/generate_dataset.toml
```

### Generate Dataset
```shell
dataload --config config/generate_dataset.toml
```
### Train model
```shell
train --config config/tumor_imm.toml
```
