"""
FreeSurfer

FreeSurfer is a software package for the analysis and visualization of
neuroimaging data from cross-sectional and longitudinal studies. It is developed
by the Laboratory for Computational Neuroimaging at the Martinos Center for
Biomedical Imaging.

FreeSurfer provides full processing streams for structural and functional MRI
and includes tools for linear and nonlinear registration, cortical and
subcortical segmentation, cortical surface reconstruction, statistical analysis
of group morphometry, diffusion MRI, PET analysis, and much more. It is also the
structural MRI analysis software of choice for the Human Connectome Project.

URL: https://github.com/freesurfer/freesurfer
"""
# This file was auto generated by Styx.
# Do not edit this file directly.

from .analyzeto4dfp import *
from .anatomi_cuts_utils import *
from .annot2std import *
from .ants_denoise_image_fs import *
from .ants_n4_bias_field_correction_fs import *
from .aparc2feat import *
from .aparc_stats_aseg import *
from .aparcstats2table import *
from .aparcstatsdiff import *
from .apas2aseg import *
from .apply_morph import *
from .aseg2feat import *
from .asegstats2table import *
from .asegstatsdiff import *
from .avi2talxfm import *
from .bblabel import *
from .bbmask import *
from .bbregister import *
from .bedpostx_mgh import *
from .bet_fsl import *
from .beta2sxa import *
from .biasfield import *
from .bmedits2surf import *
from .brec import *
from .browse_minc_header_tcl import *
from .bugr import *
from .build_desikan_killiany_gcs_csh import *
from .cblumwmgyri import *
from .check_mcr_sh import *
from .check_recons_sh import *
from .check_subject import *
from .compute_interrater_variability_csh import *
from .compute_label_volumes_csh import *
from .compute_vox2vox import *
from .conf2hires import *
from .connected_components import *
from .cor_to_minc import *
from .cp_dicom import *
from .create_morph import *
from .csvprint import *
from .dcmdir_info_mgh import *
from .dcmdjpeg_fs import *
from .dcmdrle_fs import *
from .dcmsplit import *
from .dcmunpack import *
from .deface_subject import *
from .defect2seg import *
from .defect_seg import *
from .dicom_rename import *
from .diffusion_utils import *
from .dmri_ac_sh import *
from .dmri_anatomi_cuts import *
from .dmri_bset import *
from .dmri_colored_fa import *
from .dmri_extract_surface_measurements import *
from .dmri_forrest import *
from .dmri_group import *
from .dmri_group_by_endpoints import *
from .dmri_match import *
from .dmri_mergepaths import *
from .dmri_motion import *
from .dmri_neighboring_regions import *
from .dmri_paths import *
from .dmri_pathstats import *
from .dmri_project_end_points import *
from .dmri_save_histograms import *
from .dmri_spline import *
from .dmri_stats_ac import *
from .dmri_train import *
from .dmri_trk2trk import *
from .dmri_violin_plots import *
from .dmri_vox2vox import *
from .dt_recon import *
from .epidewarp_fsl import *
from .export_gcam import *
from .extract_seg_waveform import *
from .exvivo_hemi_proc import *
from .feat2segstats import *
from .feat2surf import *
from .fiducials_calibration import *
from .fiducials_correction import *
from .fix_subject import *
from .fix_subject_corrected import *
from .fix_subject_corrected_rh import *
from .fix_subject_rh import *
from .fixup_mni_paths import *
from .flip_4dfp import *
from .flirt_fsl import *
from .flirt_newdefault_20080811_sch import *
from .fname2ext import *
from .fname2stem import *
from .freeview import *
from .fs_check_version import *
from .fs_install_mcr import *
from .fs_lib_check import *
from .fs_print_help import *
from .fs_run_from_mcr import *
from .fs_spmreg_glnxa64 import *
from .fs_temp_dir import *
from .fs_temp_file import *
from .fs_time import *
from .fs_tutorial_data import *
from .fs_update import *
from .fscalc import *
from .fscalc_fsl import *
from .fsdcmdecompress import *
from .fsfirst_fsl import *
from .fsl_5_0_2_xyztrans_sch import *
from .fsl_label2voxel import *
from .fsl_rigid_register import *
from .fsl_sub_mgh import *
from .fslmaths_fsl import *
from .fslorient_fsl import *
from .fslregister import *
from .fslswapdim_fsl import *
from .fspalm import *
from .fspython import *
from .fsr_coreg import *
from .fsr_getxopts import *
from .fsr_import import *
from .fsrealpath import *
from .fsvglrun import *
from .fvcompare import *
from .gauss_4dfp import *
from .gca_apply import *
from .gcainit import *
from .gcaprepone import *
from .gcatrain import *
from .gcatrainskull import *
from .gdcmconv_fs import *
from .gems_compute_atlas_probs import *
from .get_label_thickness import *
from .getfullpath import *
from .grad_unwarp import *
from .groupstats import *
from .groupstatsdiff import *
from .gtmseg import *
from .hiam_make_surfaces import *
from .hiam_make_template import *
from .hiam_register import *
from .histo_compute_joint_density import *
from .histo_register_block import *
from .histo_synthesize import *
from .ico_supersample import *
from .ifh2hdr import *
from .imgreg_4dfp import *
from .inflate_subject import *
from .inflate_subject3 import *
from .inflate_subject_lh import *
from .inflate_subject_new import *
from .inflate_subject_new_lh import *
from .inflate_subject_new_rh import *
from .inflate_subject_rh import *
from .inflate_subject_sc import *
from .irepifitvol import *
from .irepifitvol_glnx64 import *
from .is_lta import *
from .is_surface import *
from .isanalyze import *
from .isnifti import *
from .isolate_labels_csh import *
from .isolate_labels_keeporigval_csh import *
from .jkgcatrain import *
from .label2flat import *
from .label2patch import *
from .label_elderly_subject import *
from .label_subject import *
from .label_subject_flash import *
from .label_subject_mixed import *
from .labels_disjoint import *
from .labels_intersect import *
from .labels_union import *
from .list_otl_labels import *
from .listsubj import *
from .long_create_base_sigma import *
from .long_create_orig import *
from .long_mris_slopes import *
from .long_qdec_table import *
from .long_stats_combine import *
from .long_stats_slopes import *
from .long_stats_tps import *
from .long_submit_jobs import *
from .long_submit_postproc import *
from .longmc import *
from .lpcregister import *
from .lta_convert import *
from .lta_diff import *
from .make_average_subcort import *
from .make_average_subject import *
from .make_average_surface import *
from .make_average_volume import *
from .make_cortex_label import *
from .make_exvivo_filled import *
from .make_folding_atlas import *
from .make_hemi_mask import *
from .make_segvol_table import *
from .make_symmetric import *
from .make_upright import *
from .makevol import *
from .map_all_labels import *
from .map_all_labels_lh import *
from .map_central_sulcus import *
from .map_to_base import *
from .meanval import *
from .merge_stats_tables import *
from .mergeseg import *
from .mideface import *
from .minc2seqinfo import *
from .mkheadsurf import *
from .mkima_index_tcl import *
from .mkmnc_index_tcl import *
from .mksubjdirs import *
from .mksurfatlas import *
from .mkxsubjreg import *
from .mmppsp import *
from .mni152reg import *
from .morph_only_subject import *
from .morph_only_subject_lh import *
from .morph_only_subject_rh import *
from .morph_rgb_lh import *
from .morph_rgb_rh import *
from .morph_subject import *
from .morph_subject_lh import *
from .morph_subject_rh import *
from .morph_tables_lh import *
from .morph_tables_rh import *
from .mpr2mni305 import *
from .mri_3d_photo_recon import *
from .mri_add_new_tp import *
from .mri_add_xform_to_header import *
from .mri_align_long_csh import *
from .mri_and import *
from .mri_annotation2label import *
from .mri_aparc2aseg import *
from .mri_aparc2wmseg import *
from .mri_apply_bias import *
from .mri_average import *
from .mri_binarize import *
from .mri_brain_volume import *
from .mri_brainvol_stats import *
from .mri_ca_label import *
from .mri_ca_normalize import *
from .mri_ca_register import *
from .mri_ca_tissue_parms import *
from .mri_ca_train import *
from .mri_cal_renormalize_gca import *
from .mri_cc import *
from .mri_cnr import *
from .mri_compile_edits import *
from .mri_compute_bias import *
from .mri_compute_change_map import *
from .mri_compute_distances import *
from .mri_compute_layer_fractions import *
from .mri_compute_overlap import *
from .mri_compute_seg_overlap import *
from .mri_compute_volume_fractions import *
from .mri_compute_volume_intensities import *
from .mri_concat import *
from .mri_concatenate_gcam import *
from .mri_concatenate_lta import *
from .mri_convert import *
from .mri_copy_params import *
from .mri_copy_values import *
from .mri_cor2label import *
from .mri_coreg import *
from .mri_correct_segmentations import *
from .mri_create_t2combined import *
from .mri_create_tests import *
from .mri_cvs_check import *
from .mri_cvs_data_copy import *
from .mri_cvs_register import *
from .mri_dct_align import *
from .mri_dct_align_binary import *
from .mri_deface import *
from .mri_defacer import *
from .mri_diff import *
from .mri_dist_surf_label import *
from .mri_distance_transform import *
from .mri_easyreg import *
from .mri_easywarp import *
from .mri_edit_segmentation import *
from .mri_edit_segmentation_with_surfaces import *
from .mri_edit_wm_with_aseg import *
from .mri_em_register import *
from .mri_entowm_seg import *
from .mri_evaluate_morph import *
from .mri_extract import *
from .mri_extract_fcd_features import *
from .mri_extract_label import *
from .mri_extract_largest_cc import *
from .mri_exvivo_norm import *
from .mri_exvivo_strip import *
from .mri_fdr import *
from .mri_fieldsign import *
from .mri_fill import *
from .mri_fit_bias import *
from .mri_fslmat_to_lta import *
from .mri_func2sph import *
from .mri_funcvits import *
from .mri_fuse_intensity_images import *
from .mri_fuse_segmentations import *
from .mri_fwhm import *
from .mri_gca_ambiguous import *
from .mri_gcab_train import *
from .mri_gcut import *
from .mri_gdfglm import *
from .mri_glmfit import *
from .mri_glmfit_sim import *
from .mri_gradient_info import *
from .mri_gradunwarp import *
from .mri_gtmpvc import *
from .mri_gtmseg import *
from .mri_hausdorff_dist import *
from .mri_head import *
from .mri_hires_register import *
from .mri_histo_eq import *
from .mri_info import *
from .mri_jacobian import *
from .mri_joint_density import *
from .mri_label2label import *
from .mri_label2vol import *
from .mri_label_histo import *
from .mri_label_vals import *
from .mri_label_volume import *
from .mri_linear_align import *
from .mri_linear_align_binary import *
from .mri_linear_register import *
from .mri_log_likelihood import *
from .mri_long_normalize import *
from .mri_make_bem_surfaces import *
from .mri_make_uchar import *
from .mri_map_cpdat import *
from .mri_maps2csd import *
from .mri_mark_temporal_lobe import *
from .mri_mask import *
from .mri_matrix_multiply import *
from .mri_mc import *
from .mri_mcsim import *
from .mri_mergelabels import *
from .mri_mi import *
from .mri_modify import *
from .mri_morphology import *
from .mri_motion_correct import *
from .mri_motion_correct2 import *
from .mri_motion_correct_fsl import *
from .mri_ms_fitparms import *
from .mri_nl_align import *
from .mri_nl_align_binary import *
from .mri_nlfilter import *
from .mri_normalize import *
from .mri_normalize_tp2 import *
from .mri_nu_correct_mni import *
from .mri_or import *
from .mri_paint import *
from .mri_parse_sdcmdir import *
from .mri_path2label import *
from .mri_polv import *
from .mri_pretess import *
from .mri_probe_ima import *
from .mri_probedicom import *
from .mri_reduce import *
from .mri_refine_seg import *
from .mri_relabel_hypointensities import *
from .mri_relabel_nonwm_hypos import *
from .mri_remove_neck import *
from .mri_reorient_lr_csh import *
from .mri_rf_label import *
from .mri_rf_long_label import *
from .mri_rf_long_train import *
from .mri_rf_train import *
from .mri_ribbon import *
from .mri_rigid_register import *
from .mri_robust_register import *
from .mri_robust_template import *
from .mri_sbbr import *
from .mri_sclimbic_seg import *
from .mri_seg_diff import *
from .mri_seg_overlap import *
from .mri_segcentroids import *
from .mri_seghead import *
from .mri_segment import *
from .mri_segment_hypothalamic_subunits import *
from .mri_segment_thalamic_nuclei_dti_cnn import *
from .mri_segreg import *
from .mri_segstats import *
from .mri_sph2surf import *
from .mri_stats2seg import *
from .mri_stopmask import *
from .mri_strip_nonwhite import *
from .mri_strip_subject_info import *
from .mri_surf2surf import *
from .mri_surf2vol import *
from .mri_surf2volseg import *
from .mri_surfacemask import *
from .mri_surfcluster import *
from .mri_synthesize import *
from .mri_synthmorph import *
from .mri_synthseg import *
from .mri_synthsr import *
from .mri_synthsr_hyperfine import *
from .mri_synthstrip import *
from .mri_tessellate import *
from .mri_threshold import *
from .mri_topologycorrection import *
from .mri_train import *
from .mri_transform import *
from .mri_twoclass import *
from .mri_validate_skull_stripped import *
from .mri_vessel_segment import *
from .mri_vol2label import *
from .mri_vol2surf import *
from .mri_vol2vol import *
from .mri_volcluster import *
from .mri_voldiff import *
from .mri_volsynth import *
from .mri_warp_convert import *
from .mri_watershed import *
from .mri_wbc import *
from .mri_xvolavg import *
from .mri_z2p import *
from .mris2rgb import *
from .mris_aa_shrinkwrap import *
from .mris_add_template import *
from .mris_anatomical_stats import *
from .mris_annot_diff import *
from .mris_annot_to_segmentation import *
from .mris_apply_reg import *
from .mris_autodet_gwstats import *
from .mris_average_curvature import *
from .mris_ba_segment import *
from .mris_ca_deform import *
from .mris_ca_label import *
from .mris_ca_train import *
from .mris_calc import *
from .mris_compute_acorr import *
from .mris_compute_layer_intensities import *
from .mris_compute_lgi import *
from .mris_compute_overlap import *
from .mris_compute_parc_overlap import *
from .mris_compute_volume_fractions import *
from .mris_congeal import *
from .mris_convert import *
from .mris_copy_header import *
from .mris_curvature import *
from .mris_curvature2image import *
from .mris_curvature_stats import *
from .mris_defects_pointset import *
from .mris_deform import *
from .mris_diff import *
from .mris_distance_map import *
from .mris_distance_to_label import *
from .mris_distance_transform import *
from .mris_divide_parcellation import *
from .mris_entropy import *
from .mris_errors import *
from .mris_estimate_wm import *
from .mris_euler_number import *
from .mris_expand import *
from .mris_extract_main_component import *
from .mris_extract_patches import *
from .mris_extract_values import *
from .mris_exvivo_surfaces import *
from .mris_fill import *
from .mris_find_flat_regions import *
from .mris_fix_topology import *
from .mris_flatten import *
from .mris_fwhm import *
from .mris_gradient import *
from .mris_hausdorff_dist import *
from .mris_image2vtk import *
from .mris_inflate import *
from .mris_info import *
from .mris_init_global_tractography import *
from .mris_intensity_profile import *
from .mris_interpolate_warp import *
from .mris_jacobian import *
from .mris_label2annot import *
from .mris_label_area import *
from .mris_label_calc import *
from .mris_label_mode import *
from .mris_left_right_register import *
from .mris_make_average_surface import *
from .mris_make_face_parcellation import *
from .mris_make_surfaces import *
from .mris_make_template import *
from .mris_map_cuts import *
from .mris_mef_surfaces import *
from .mris_merge_parcellations import *
from .mris_mesh_subdivide import *
from .mris_morph_stats import *
from .mris_ms_refine import *
from .mris_multimodal import *
from .mris_multimodal_surface_placement import *
from .mris_multiscale_stats import *
from .mris_niters2fwhm import *
from .mris_nudge import *
from .mris_parcellate_connectivity import *
from .mris_place_surface import *
from .mris_pmake import *
from .mris_preproc import *
from .mris_profile_clustering import *
from .mris_refine_surfaces import *
from .mris_register import *
from .mris_register_label_map import *
from .mris_register_to_label import *
from .mris_register_to_volume import *
from .mris_remesh import *
from .mris_remove_intersection import *
from .mris_remove_negative_vertices import *
from .mris_remove_variance import *
from .mris_reposition_surface import *
from .mris_resample import *
from .mris_rescale import *
from .mris_reverse import *
from .mris_rf_label import *
from .mris_rf_train import *
from .mris_rotate import *
from .mris_sample_label import *
from .mris_sample_parc import *
from .mris_seg2annot import *
from .mris_segment import *
from .mris_segment_vals import *
from .mris_segmentation_stats import *
from .mris_shrinkwrap import *
from .mris_simulate_atrophy import *
from .mris_skeletonize import *
from .mris_smooth import *
from .mris_smooth_intracortical import *
from .mris_sphere import *
from .mris_spherical_average import *
from .mris_surf2vtk import *
from .mris_surface_stats import *
from .mris_surface_to_vol_distances import *
from .mris_talairach import *
from .mris_target_pos import *
from .mris_thickness import *
from .mris_thickness_comparison import *
from .mris_thickness_diff import *
from .mris_topo_fixer import *
from .mris_transform import *
from .mris_translate_annotation import *
from .mris_transmantle_dysplasia_paths import *
from .mris_volmask import *
from .mris_volmask_novtk import *
from .mris_volmask_vtk import *
from .mris_volsmooth import *
from .mris_volume import *
from .mris_warp import *
from .mris_watershed import *
from .mris_wm_volume import *
from .mrisp_paint import *
from .mrisp_write import *
from .ms_refine_subject import *
from .nmovie_qt import *
from .oct_register_mosaic import *
from .optseq2 import *
from .orient_las import *
from .parc_atlas_jackknife_test import *
from .pctsurfcon import *
from .plot_structure_stats_tcl import *
from .pointset2label import *
from .polyorder import *
from .post_recon_all import *
from .predict_v1_sh import *
from .print_unique_labels_csh import *
from .qatools_py import *
from .quantify_brainstem_structures_sh import *
from .quantify_hasubregions_sh import *
from .quantify_thalamic_nuclei_sh import *
from .rbbr import *
from .rca_base_init import *
from .rca_config import *
from .rca_config2csh import *
from .rca_fix_ento import *
from .rca_long_tp_init import *
from .rcbf_prep import *
from .recon_all import *
from .recon_all_clinical_sh import *
from .recon_all_exvivo import *
from .reconbatchjobs import *
from .reg2subject import *
from .reg_feat2anat import *
from .reg_mni305_2mm import *
from .regdat2xfm import *
from .register_child import *
from .register_csh import *
from .register_elderly_subject import *
from .register_subject import *
from .register_subject_flash import *
from .reinflate_subject import *
from .reinflate_subject_lh import *
from .reinflate_subject_rh import *
from .remove_talairach import *
from .renormalize_subject_keep_editting import *
from .renormalize_t1_subject import *
from .reregister_subject_mixed import *
from .rtview import *
from .run_mris_preproc import *
from .run_qdec_glm import *
from .run_samseg import *
from .run_samseg_long import *
from .run_segment_subfields_t1_longitudinal_sh import *
from .run_segment_subject_sh import *
from .run_segment_subject_t1_auto_estimate_alveus_ml_sh import *
from .run_segment_subject_t1_t2_auto_estimate_alveus_ml_sh import *
from .run_segment_subject_t2_auto_estimate_alveus_ml_sh import *
from .run_segment_thalamic_nuclei_sh import *
from .samseg import *
from .samseg2recon import *
from .samseg_long import *
from .samsegmesh2surf import *
from .sbtiv import *
from .seg2filled import *
from .seg2recon import *
from .segment_bs_sh import *
from .segment_ha_t1_long_sh import *
from .segment_ha_t1_sh import *
from .segment_ha_t2_sh import *
from .segment_monkey import *
from .segment_subfields_t1_longitudinal import *
from .segment_subject import *
from .segment_subject_notal import *
from .segment_subject_notal2 import *
from .segment_subject_old_skull_strip import *
from .segment_subject_sc import *
from .segment_subject_t1_auto_estimate_alveus_ml import *
from .segment_subject_t1_t2_auto_estimate_alveus_ml import *
from .segment_subject_t2_auto_estimate_alveus_ml import *
from .segment_subregions import *
from .segment_thalamic_nuclei import *
from .segment_thalamic_nuclei_sh import *
from .segpons import *
from .setlabelstat import *
from .sfa2fieldsign import *
from .slicedelay import *
from .slicetimer_fsl import *
from .sphere_subject import *
from .sphere_subject_lh import *
from .sphere_subject_rh import *
from .spline3_test import *
from .spm_t_to_b import *
from .spmregister import *
from .sratio import *
from .stat_normalize import *
from .stattablediff import *
from .stem2fname import *
from .surf2vol import *
from .surfreg import *
from .swi_preprocess import *
from .swi_process import *
from .t4img_4dfp import *
from .t4imgs_4dfp import *
from .table2map import *
from .tal_compare import *
from .tal_qc_azs import *
from .talairach import *
from .talairach2 import *
from .talairach_afd import *
from .talairach_avi import *
from .talairach_mgh import *
from .talsegprob import *
from .test_orientation_planes_from_parcellation import *
from .test_recon_all_csh import *
from .test_tutorials_sh import *
from .thickdiffmap import *
from .tkmedit import *
from .tkmeditfv import *
from .tkregister2 import *
from .tkregister2_cmdl import *
from .tkregisterfv import *
from .tksurfer import *
from .tksurferfv import *
from .trac_all import *
from .trac_paths import *
from .trac_preproc import *
from .tractstats2table import *
from .train_gcs_atlas import *
from .tridec import *
from .trk_tools import *
from .unpack_ima1_tcl import *
from .unpack_ima_tcl import *
from .unpack_mnc_tcl import *
from .unpackimadir import *
from .unpackimadir2 import *
from .unpackmincdir import *
from .unpacksdcmdir import *
from .update_needed import *
from .v_3dvolreg_afni import *
from .v_4dfptoanalyze import *
from .ventfix import *
from .vertexvol import *
from .vno_match_check import *
from .vol2segavg import *
from .vol2subfield import *
from .vol2symsurf import *
from .vsm_smooth import *
from .wfilemask import *
from .wm_anat_snr import *
from .wmedits2surf import *
from .wmsaseg import *
from .xcerebralseg import *
from .xcorr import *
from .xfmrot import *
from .xhemi_tal import *
from .xhemireg import *
from .xsanatreg import *
from .zero_lt_4dfp import *
