1.0.3 (April 30, 2018)
======================

###### [Full changelog](https://github.com/nipy/nipype/milestone/19?closed=1)

  * FIX: Propagate explicit Workflow config to Nodes (https://github.com/nipy/nipype/pull/2559)
  * FIX: Return non-enhanced volumes from dwi_flirt (https://github.com/nipy/nipype/pull/2547)
  * FIX: Skip filename generation when required fields are missing (https://github.com/nipy/nipype/pull/2549)
  * FIX: Fix Afni's Allineate hashing and out_file (https://github.com/nipy/nipype/pull/2502)
  * FIX: Replace deprecated ``HasTraits.get`` with ``trait_get`` (https://github.com/nipy/nipype/pull/2534)
  * FIX: Typo in "antsRegistrationSyNQuick.sh" (https://github.com/nipy/nipype/pull/2544)
  * FIX: DTITK Interface (https://github.com/nipy/nipype/pull/2514)
  * FIX: Add ``-mas`` argument to fsl.utils.ImageMaths (https://github.com/nipy/nipype/pull/2529)
  * FIX: Build cmdline from working directory (https://github.com/nipy/nipype/pull/2521)
  * FIX: FSL orthogonalization bug (https://github.com/nipy/nipype/pull/2523)
  * FIX: Re-enable dcm2niix source_names (https://github.com/nipy/nipype/pull/2550)
  * ENH: Add an activation count map interface (https://github.com/nipy/nipype/pull/2522)
  * ENH: Revise the implementation of FuzzyOverlap (https://github.com/nipy/nipype/pull/2530)
  * ENH: Add MultiObject, ensure/simplify_list; alias old names for 1.x compatibility (https://github.com/nipy/nipype/pull/2517)
  * ENH: Add LibraryBaseInterface (https://github.com/nipy/nipype/pull/2538)
  * ENH: Define default output file template for afni.CatMatvec (https://github.com/nipy/nipype/pull/2527)
  * MAINT: Deprecate terminal_output and ignore_exception from CommandLine (https://github.com/nipy/nipype/pull/2552)
  * MAINT: Set traits default values properly (https://github.com/nipy/nipype/pull/2533)
  * MAINT: use RawConfigParser (https://github.com/nipy/nipype/pull/2542)
  * MAINT: Minor autotest cleanups (https://github.com/nipy/nipype/pull/2519)
  * CI: Add retry script for Docker commands (https://github.com/nipy/nipype/pull/2516)

1.0.2 (March 27, 2018)
======================

###### [Full changelog](https://github.com/nipy/nipype/milestone/16?closed=1)

  * FIX: dcm2niix interface (https://github.com/nipy/nipype/pull/2498)
  * FIX: mark .niml.dset as special extension in utils.filemanip (https://github.com/nipy/nipype/pull/2495)
  * FIX: handle automatic module creation, name extraction, default value (https://github.com/nipy/nipype/pull/2490)
  * FIX: Check and report mount table parsing failures (https://github.com/nipy/nipype/pull/2476)
  * FIX: Check against full node name when reconnecting JoinNodes (https://github.com/nipy/nipype/pull/2479)
  * DOC: Add tutorials, porcupine to users TOC (https://github.com/nipy/nipype/pull/2503
  * DOC: Contributing and testing (https://github.com/nipy/nipype/pull/2482)
  * DOC: Describe 'orphaned' tag in CONTRIBUTING (https://github.com/nipy/nipype/pull/2481)
  * DOC: Add details for dcm2niix output filename pattern (https://github.com/nipy/nipype/pull/2512)
  * ENH: Add interface for AFNI 3dNwarpAdjust (https://github.com/nipy/nipype/pull/2450)
  * ENH: Update SSHDataGrabber to fetch related files (https://github.com/nipy/nipype/pull/2104)
  * ENH: Add interpolation order parameter to NiftyReg's RegTools (https://github.com/nipy/nipype/pull/2471)
  * MAINT: Stray warnings and exceptions (https://github.com/nipy/nipype/pull/2478)
  * MAINT: Add dev install option, update CONTRIBUTING (https://github.com/nipy/nipype/pull/2477)
  * MAINT: Sync requirements with info.py (https://github.com/nipy/nipype/pull/2472)
  * CI: Update Travis builds, Docker to use latest miniconda (https://github.com/nipy/nipype/pull/2455)
  * TEST: Parallelize pytest (https://github.com/nipy/nipype/pull/2469)

1.0.1 (February 27, 2018)
=========================

###### [Full changelog](https://github.com/nipy/nipype/milestone/16?closed=1)

* FIX: Small bug in freesurfer label2annot fill_thresh specs [#2377](https://github.com/nipy/nipype/pull/2377)
* FIX: Error creating gradients in DTIRecon [#2460](https://github.com/nipy/nipype/pull/2460)
* FIX: improve matlab_cmd [#2452](https://github.com/nipy/nipype/pull/2452)
* FIX: Extract unit information from image header in CompCor [#2458](https://github.com/nipy/nipype/pull/2458)
* FIX: Update pybids data directory, unbundle out-of-date numpydoc [#2437](https://github.com/nipy/nipype/pull/2437)
* FIX: Out_file bugs in Afni.Zcat and Afni.Merge interfaces [#2424](https://github.com/nipy/nipype/pull/2424)
* FIX: Re-enable spm.Realign to take lists of lists of files [#2409](https://github.com/nipy/nipype/pull/2409)
* FIX: Remove deprecated output from ICC interface [#2422](https://github.com/nipy/nipype/pull/2422)
* FIX: Argstr for mask in Afni.BlurToFWHM [#2418](https://github.com/nipy/nipype/pull/2418)
* FIX: Default value for sbatch_args (SLURMGraph) [#2417](https://github.com/nipy/nipype/pull/2417)
* FIX: Ortvec argstr for Afni.Deconvolve [#2415](https://github.com/nipy/nipype/pull/2415)
* FIX: Bug fixes for afni.model [#2398](https://github.com/nipy/nipype/pull/2398)
* DOC: Add brief neurodocker tutorial [#2464](https://github.com/nipy/nipype/pull/2464)
* DOC: Fix tutorials [#2459](https://github.com/nipy/nipype/pull/2459)
* ENH: antsRegistrationSyNQuick interface [#2453](https://github.com/nipy/nipype/pull/2453)
* ENH: Automate updates of CHANGES [#2440](https://github.com/nipy/nipype/pull/2440)
* ENH: Add SPM Fieldmap Tool wrapper [#1905](https://github.com/nipy/nipype/pull/1905)
* ENH: Additional option for DataGrabber [#1915](https://github.com/nipy/nipype/pull/1915)
* ENH: Add 3dTproject AFNI interface, Fix OneDToolPy, Add -noFDR flag to 3dDeconvolve [#2426](https://github.com/nipy/nipype/pull/2426)
* ENH: c3d/c4d interface [#2430](https://github.com/nipy/nipype/pull/2430)
* ENH: Allow input weight for AFNI's volreg. [#2396](https://github.com/nipy/nipype/pull/2396)
* ENH: Delay crashing if exception is raised in local hash check [#2410](https://github.com/nipy/nipype/pull/2410)
* CI: Add doctests to pytest script [#2449](https://github.com/nipy/nipype/pull/2449)
* CI: Ignore tests in calculating coverage [#2443](https://github.com/nipy/nipype/pull/2443)
* CI: Saturate Circle workflow [#2386](https://github.com/nipy/nipype/pull/2386)
* REF: Update and factor mount table parsing [#2444](https://github.com/nipy/nipype/pull/2444)
* REF: Make ignore_exception a class attribute [#2414](https://github.com/nipy/nipype/pull/2414)

1.0.0 (January 24, 2018)
========================

###### [Full changelog](https://github.com/nipy/nipype/milestone/16?closed=1)

* FIX: Change to interface workdir within ``Interface.run()`` instead Node (https://github.com/nipy/nipype/pull/2384)
* FIX: PBS plugin submissions (https://github.com/nipy/nipype/pull/2344)
* FIX: Graph plugins submissions (https://github.com/nipy/nipype/pull/2359)
* FIX: Logging error if % in interface command (https://github.com/nipy/nipype/pull/2364)
* FIX: Robustly handled outputs of 3dFWHMx across different versions of AFNI (https://github.com/nipy/nipype/pull/2373)
* FIX: Cluster threshold in randomise + change default prefix (https://github.com/nipy/nipype/pull/2369)
* FIX: Errors parsing ``$DISPLAY`` (https://github.com/nipy/nipype/pull/2363)
* FIX: MultiProc starting workers at dubious wd (https://github.com/nipy/nipype/pull/2368)
* FIX: Explicitly collect MultiProc job IDs (https://github.com/nipy/nipype/pull/2378)
* FIX: Correct Windows environment canonicalization (https://github.com/nipy/nipype/pull/2328)
* FIX: Linked libraries (https://github.com/nipy/nipype/pull/2322)
* REF+FIX: Move BIDSDataGrabber to `interfaces.io` + fix correct default behavior (https://github.com/nipy/nipype/pull/2336)
* REF+MAINT: Simplify hashing (https://github.com/nipy/nipype/pull/2383)
* MAINT: Cleanup Interfaces base (https://github.com/nipy/nipype/pull/2387)
* MAINT: Cleanup EngineBase (https://github.com/nipy/nipype/pull/2376)
* MAINT: Cleaning / simplify ``Node`` (https://github.com/nipy/nipype/pull/2325)
* MAINT+ENH: Update and extend MRtrix3 interfaces (https://github.com/nipy/nipype/pull/2338)
* ENH: Add AFNI interface for 3dConvertDset (https://github.com/nipy/nipype/pull/2337)
* ENH: Allow specific interface command prefixes (https://github.com/nipy/nipype/pull/2379)
* STY: Cleanup of PEP8 violations (https://github.com/nipy/nipype/pull/2358)
* STY: Cleanup of trailing spaces and adding of missing newlines at end of files (https://github.com/nipy/nipype/pull/2355)
* STY: Apply yapf to codebase (https://github.com/nipy/nipype/pull/2371)
* DOC: Updated guide for contributing (https://github.com/nipy/nipype/pull/2393)
