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# interfaces.dcm2nii

## Dcm2nii

Link to code

Wraps command dcm2nii

Inputs:

    [Mandatory]
    source_names: (an existing file name)
    terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
            Control terminal output: `stream` - displays to terminal
            immediately, `allatonce` - waits till command is finished to display
            output, `file` - writes output to file, `none` - output is ignored

    [Optional]
    anonymize: (a boolean)
    args: (a string)
            Additional parameters to the command
    config_file: (an existing file name)
    convert_all_pars: (a boolean)
    environ: (a dictionary with keys which are a value of type 'str' and
             with values which are a value of type 'str', nipype default value:
             {})
            Environment variables
    gzip_output: (a boolean, nipype default value: False)
    id_in_filename: (a boolean, nipype default value: False)
    ignore_exception: (a boolean, nipype default value: False)
            Print an error message instead of throwing an exception in case the
            interface fails to run
    nii_output: (a boolean, nipype default value: True)
    output_dir: (an existing directory name)
    reorient: (a boolean)
    reorient_and_crop: (a boolean)
    source_names: (an existing file name)
    terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
            Control terminal output: `stream` - displays to terminal
            immediately, `allatonce` - waits till command is finished to display
            output, `file` - writes output to file, `none` - output is ignored

Outputs:

    bvals: (an existing file name)
    bvecs: (an existing file name)
    converted_files: (an existing file name)
    reoriented_and_cropped_files: (an existing file name)
    reoriented_files: (an existing file name)