.. AUTO-GENERATED FILE -- DO NOT EDIT!

interfaces.camino2trackvis.convert
==================================


.. _nipype.interfaces.camino2trackvis.convert.Camino2Trackvis:


.. index:: Camino2Trackvis

Camino2Trackvis
---------------

`Link to code <http://github.com/nipy/nipype/tree/99796c15f2e157774a3f54f878fdd06ad981a80b/nipype/interfaces/camino2trackvis/convert.py#L50>`_

Wraps command **camino_to_trackvis**

Wraps camino_to_trackvis from Camino-Trackvis

Convert files from camino .Bfloat format to trackvis .trk format.

Example
~~~~~~~

>>> import nipype.interfaces.camino2trackvis as cam2trk
>>> c2t = cam2trk.Camino2Trackvis()
>>> c2t.inputs.in_file = 'data.Bfloat'
>>> c2t.inputs.out_file = 'streamlines.trk'
>>> c2t.inputs.min_length = 30
>>> c2t.inputs.data_dims = [128, 104, 64]
>>> c2t.inputs.voxel_dims = [2.0, 2.0, 2.0]
>>> c2t.inputs.voxel_order = 'LAS'
>>> c2t.run()                  # doctest: +SKIP

Inputs::

        [Mandatory]
        data_dims: (a list of from 3 to 3 items which are an integer)
                Three comma-separated integers giving the number of voxels along each dimension of the
                source scans.
        in_file: (an existing file name)
                The input .Bfloat (camino) file.
        voxel_dims: (a list of from 3 to 3 items which are a float)
                Three comma-separated numbers giving the size of each voxel in mm.
        voxel_order: (a file name)
                Set the order in which various directions were stored.        Specify with three letters
                consisting of one each          from the pairs LR, AP, and SI. These stand for Left-
                Right,         Anterior-Posterior, and Superior-Inferior.          Whichever is
                specified in each position will          be the direction of increasing order.
                Read coordinate system from a NIfTI file.

        [Optional]
        args: (a string)
                Additional parameters to the command
        environ: (a dictionary with keys which are a value of type 'str' and with values which
                 are a value of type 'str', nipype default value: {})
                Environment variables
        ignore_exception: (a boolean, nipype default value: False)
                Print an error message instead of throwing an exception in case the interface fails to
                run

Outputs::

        trackvis: (an existing file name)
                The filename to which to write the .trk (trackvis) file.

.. _nipype.interfaces.camino2trackvis.convert.Trackvis2Camino:


.. index:: Trackvis2Camino

Trackvis2Camino
---------------

`Link to code <http://github.com/nipy/nipype/tree/99796c15f2e157774a3f54f878fdd06ad981a80b/nipype/interfaces/camino2trackvis/convert.py#L115>`_

Wraps command **trackvis_to_camino**


Inputs::

        [Mandatory]
        in_file: (an existing file name)
                The input .trk (trackvis) file.

        [Optional]
        args: (a string)
                Additional parameters to the command
        environ: (a dictionary with keys which are a value of type 'str' and with values which
                 are a value of type 'str', nipype default value: {})
                Environment variables
        ignore_exception: (a boolean, nipype default value: False)
                Print an error message instead of throwing an exception in case the interface fails to
                run

Outputs::

        camino: (an existing file name)
                The filename to which to write the .Bfloat (camino).
