Home · Quickstart · Documentation · Citation · NiPy

# interfaces.slicer.utilities

## EMSegmentTransformToNewFormat

Link to code

Wraps command **/home/raid3/gorgolewski/software/slicer/Slicer –launch EMSegmentTransformToNewFormat **

title:
  Transform MRML Files to New EMSegmenter Standard
category:
  Utilities
description:
  Transform MRML Files to New EMSegmenter Standard

Inputs:

    [Mandatory]

    [Optional]
    args: (a string)
            Additional parameters to the command
    environ: (a dictionary with keys which are a value of type 'str' and with values which
             are a value of type 'str', nipype default value: {})
            Environment variables
    ignore_exception: (a boolean, nipype default value: False)
            Print an error message instead of throwing an exception in case the interface fails to
            run
    inputMRMLFileName: (an existing file name)
            Active MRML scene that contains EMSegment algorithm parameters in the format before
            3.6.3 - please include absolute  file name in path.
    outputMRMLFileName: (a boolean or a file name)
            Write out the MRML scene after transformation to format 3.6.3 has been made. - has to be
            in the same directory as the input MRML file due to Slicer Core bug  - please include
            absolute  file name in path
    templateFlag: (a boolean)
            Set to true if the transformed mrml file should be used as template file

Outputs:

    outputMRMLFileName: (an existing file name)
            Write out the MRML scene after transformation to format 3.6.3 has been made. - has to be
            in the same directory as the input MRML file due to Slicer Core bug  - please include
            absolute  file name in path