\BOOKMARK [0][-]{chapter.1}{User Guide}{}
\BOOKMARK [1][-]{section.1.1}{Download and install}{chapter.1}
\BOOKMARK [1][-]{section.1.2}{Configuration File}{chapter.1}
\BOOKMARK [1][-]{section.1.3}{Tutorial : Interfaces}{chapter.1}
\BOOKMARK [1][-]{section.1.4}{Tutorial : Workflows}{chapter.1}
\BOOKMARK [1][-]{section.1.5}{Model Specification for First Level fMRI Analysis}{chapter.1}
\BOOKMARK [1][-]{section.1.6}{Distributed processing with nipype}{chapter.1}
\BOOKMARK [0][-]{chapter.2}{Interfaces and Algorithms}{}
\BOOKMARK [1][-]{section.2.1}{nipype.algorithms.misc}{chapter.2}
\BOOKMARK [1][-]{section.2.2}{nipype.algorithms.modelgen}{chapter.2}
\BOOKMARK [1][-]{section.2.3}{nipype.algorithms.rapidart}{chapter.2}
\BOOKMARK [1][-]{section.2.4}{nipype.interfaces.camino.connectivity}{chapter.2}
\BOOKMARK [1][-]{section.2.5}{nipype.interfaces.camino.convert}{chapter.2}
\BOOKMARK [1][-]{section.2.6}{nipype.interfaces.camino.dti}{chapter.2}
\BOOKMARK [1][-]{section.2.7}{nipype.interfaces.camino2trackvis.convert}{chapter.2}
\BOOKMARK [1][-]{section.2.8}{nipype.interfaces.cmtk.base}{chapter.2}
\BOOKMARK [1][-]{section.2.9}{nipype.interfaces.cmtk.cmtk}{chapter.2}
\BOOKMARK [1][-]{section.2.10}{nipype.interfaces.dcm2nii}{chapter.2}
\BOOKMARK [1][-]{section.2.11}{nipype.interfaces.diffusion\137toolkit.base}{chapter.2}
\BOOKMARK [1][-]{section.2.12}{nipype.interfaces.diffusion\137toolkit.dti}{chapter.2}
\BOOKMARK [1][-]{section.2.13}{nipype.interfaces.diffusion\137toolkit.odf}{chapter.2}
\BOOKMARK [1][-]{section.2.14}{nipype.interfaces.diffusion\137toolkit.postproc}{chapter.2}
\BOOKMARK [1][-]{section.2.15}{nipype.interfaces.freesurfer.base}{chapter.2}
\BOOKMARK [1][-]{section.2.16}{nipype.interfaces.freesurfer.model}{chapter.2}
\BOOKMARK [1][-]{section.2.17}{nipype.interfaces.freesurfer.preprocess}{chapter.2}
\BOOKMARK [1][-]{section.2.18}{nipype.interfaces.freesurfer.utils}{chapter.2}
\BOOKMARK [1][-]{section.2.19}{nipype.interfaces.fsl.base}{chapter.2}
\BOOKMARK [1][-]{section.2.20}{nipype.interfaces.fsl.dti}{chapter.2}
\BOOKMARK [1][-]{section.2.21}{nipype.interfaces.fsl.maths}{chapter.2}
\BOOKMARK [1][-]{section.2.22}{nipype.interfaces.fsl.model}{chapter.2}
\BOOKMARK [1][-]{section.2.23}{nipype.interfaces.fsl.preprocess}{chapter.2}
\BOOKMARK [1][-]{section.2.24}{nipype.interfaces.fsl.utils}{chapter.2}
\BOOKMARK [1][-]{section.2.25}{nipype.interfaces.io}{chapter.2}
\BOOKMARK [1][-]{section.2.26}{nipype.interfaces.nipy.model}{chapter.2}
\BOOKMARK [1][-]{section.2.27}{nipype.interfaces.nipy.preprocess}{chapter.2}
\BOOKMARK [1][-]{section.2.28}{nipype.interfaces.nitime.analysis}{chapter.2}
\BOOKMARK [1][-]{section.2.29}{nipype.interfaces.slicer}{chapter.2}
\BOOKMARK [1][-]{section.2.30}{nipype.interfaces.spm.base}{chapter.2}
\BOOKMARK [1][-]{section.2.31}{nipype.interfaces.spm.model}{chapter.2}
\BOOKMARK [1][-]{section.2.32}{nipype.interfaces.spm.preprocess}{chapter.2}
\BOOKMARK [1][-]{section.2.33}{nipype.interfaces.spm.utils}{chapter.2}
\BOOKMARK [1][-]{section.2.34}{nipype.interfaces.utility}{chapter.2}
\BOOKMARK [1][-]{section.2.35}{nipype.workflows.camino.camino\137dti\137processing}{chapter.2}
\BOOKMARK [1][-]{section.2.36}{nipype.workflows.fsl.dti}{chapter.2}
\BOOKMARK [1][-]{section.2.37}{nipype.workflows.fsl.preprocess}{chapter.2}
\BOOKMARK [0][-]{chapter.3}{Developer Guide}{}
\BOOKMARK [1][-]{section.3.1}{Interface Specifications}{chapter.3}
\BOOKMARK [1][-]{section.3.2}{How to wrap a command line tool}{chapter.3}
\BOOKMARK [1][-]{section.3.3}{How to wrap a MATLAB script}{chapter.3}
\BOOKMARK [1][-]{section.3.4}{How to wrap a Python script}{chapter.3}
\BOOKMARK [1][-]{section.3.5}{Working with nipype source code}{chapter.3}
\BOOKMARK [1][-]{section.3.6}{Architecture \(discussions from 2009\)}{chapter.3}
\BOOKMARK [0][-]{chapter.4}{Changes in Nipype}{}
\BOOKMARK [1][-]{section.4.1}{Release 0.4 \(FUTURE\)}{chapter.4}
\BOOKMARK [1][-]{section.4.2}{Release 0.3.4 \(Jan 12, 2011\)}{chapter.4}
\BOOKMARK [1][-]{section.4.3}{Release 0.3.3 \(Sep 16, 2010\)}{chapter.4}
\BOOKMARK [1][-]{section.4.4}{Release 0.3.2 \(Aug 03, 2010\)}{chapter.4}
\BOOKMARK [1][-]{section.4.5}{Release 0.3.1 \(Jul 29, 2010\)}{chapter.4}
\BOOKMARK [1][-]{section.4.6}{Release 0.3 \(Jul 27, 2010\)}{chapter.4}
