Metadata-Version: 2.1
Name: niftiprocessing
Version: 0.0.5
Summary: A nifti processing tool
Home-page: https://github.com/alleetw101/niftiprocessing
Author: Alan Lee
Author-email: alleetw101@gmail.com
License: UNKNOWN
Description: # NiftiProcessing
        
        A nifti file processing tool
        
        Under development
        
        This software has NOT been approved for medical analysis/diagnosis. Please use other
        approved software in for medical use.
        
        # Options
            positional arguments:
              path                  Path to file
            
            optional arguments:
              -h, --help            show this help message and exit
              --precision {32,64}   Sets datatype precision in float32 or 64
              --info, -i            Outputs .nii file metadata
              --plot PLOT, -p PLOT  Plots image of 2nd/3rd dimension in .nii file 
                                    (Requires MatplotLib)
              --align, -a           Orients .nii file in MNI152 space
              --normalize, -n       Normalizes .nii file values within set values 
                                    (Default: 0.,1.)
              --normalize-lower     Lower value for normalization (Default: 0.)
              --normalize-upper     Lower value for normalization (Default: 0.)
              --rotate, -r          Rotates .nii file by 90 degress in 1st and 2nd dimension
              --output, -o          Filename for .nii file generation 
                                    (Note: Currently erases orginal metadata)
        
        # Usage Examples
        ```bash
        # Orients nifti file to MNI152 space
        $ niftiprocessing sample.nii.gz -a -o output.nii.gz
        
        # Plot slice 150 with matplotlib
        $ niftiprocessing sample.nii.gz -p 150
        ```
        
        ## Actions to implement:
        
        Input
        - Single
        - Batch (directory)
        
        Tools
        - resize
        - resize with pad
        - resize with crop
        - flip
        - rotate
        - invert
        - denoise
        - normalize
        - align
        
        Information
        - scan information
        
        Visualize
        - terminal drawing output for orientation
        
        Output
        - Single
        - Batch (directory)
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
