.gitignore
.travis.yml
CHANGELOG.md
CONTRIBUTING.md
COPYING
Dockerfile-debian
Dockerfile-redhat
README.md
Singularity
docker-compose.yml
formatters.py
niceman.cfg
readthedocs.yml
requirements-devel.txt
requirements.txt
setup.cfg
setup.py
setup_support.py
tox.ini
docs/Makefile
docs/source/acknowledgements.rst
docs/source/background.rst
docs/source/cmdline.rst
docs/source/conf.py
docs/source/glossary.rst
docs/source/index.rst
docs/source/modref.rst
docs/source/related.rst
docs/source/_static/niceman_logo.png
docs/source/_templates/autosummary/module.rst
docs/source/sandbox/ReproNim Entities.png
docs/source/sandbox/ReproNim Entities.xml
docs/source/sandbox/hierarchy.rst
docs/source/sandbox/packages.rst
docs/source/usecases/index.rst
niceman/__init__.py
niceman/api.py
niceman/base.py
niceman/cmd.py
niceman/config.py
niceman/conftest.py
niceman/consts.py
niceman/dochelpers.py
niceman/log.py
niceman/utils.py
niceman/version.py
niceman.egg-info/PKG-INFO
niceman.egg-info/SOURCES.txt
niceman.egg-info/dependency_links.txt
niceman.egg-info/entry_points.txt
niceman.egg-info/requires.txt
niceman.egg-info/top_level.txt
niceman/cmdline/__init__.py
niceman/cmdline/common_args.py
niceman/cmdline/helpers.py
niceman/cmdline/main.py
niceman/cmdline/tests/__init__.py
niceman/cmdline/tests/test_helpers.py
niceman/distributions/__init__.py
niceman/distributions/base.py
niceman/distributions/conda.py
niceman/distributions/debian.py
niceman/distributions/docker.py
niceman/distributions/neurodebian.py
niceman/distributions/piputils.py
niceman/distributions/redhat.py
niceman/distributions/singularity.py
niceman/distributions/vcs.py
niceman/distributions/venv.py
niceman/distributions/tests/__init__.py
niceman/distributions/tests/test_conda.py
niceman/distributions/tests/test_debian.py
niceman/distributions/tests/test_distribution.py
niceman/distributions/tests/test_docker.py
niceman/distributions/tests/test_environment.py
niceman/distributions/tests/test_piputils.py
niceman/distributions/tests/test_redhat.py
niceman/distributions/tests/test_singularity.py
niceman/distributions/tests/test_vcs.py
niceman/distributions/tests/test_venv.py
niceman/distributions/tests/files/conda.yaml
niceman/examples/__init__.py
niceman/examples/example.py
niceman/examples/pipype_output.trig
niceman/examples/reprozip_output.yml
niceman/examples/tests/__init__.py
niceman/examples/tests/test_example.py
niceman/formats/__init__.py
niceman/formats/base.py
niceman/formats/niceman.py
niceman/formats/reprozip.py
niceman/formats/trig.py
niceman/formats/utils.py
niceman/formats/tests/__init__.py
niceman/formats/tests/constants.py
niceman/formats/tests/fixtures.py
niceman/formats/tests/test_niceman.py
niceman/formats/tests/test_provenance.py
niceman/formats/tests/test_reprozip.py
niceman/formats/tests/files/demo_spec2.yml
niceman/formats/tests/files/nicemanspec1_v0.0.1.yml
niceman/formats/tests/files/nicemanspec2_v0.0.1.yml
niceman/formats/tests/files/reprozip_spec1.yml
niceman/formats/tests/files/reprozip_xeyes.yml
niceman/interface/__init__.py
niceman/interface/backend_parameters.py
niceman/interface/base.py
niceman/interface/common_opts.py
niceman/interface/create.py
niceman/interface/delete.py
niceman/interface/diff.py
niceman/interface/execute.py
niceman/interface/install.py
niceman/interface/login.py
niceman/interface/ls.py
niceman/interface/retrace.py
niceman/interface/start.py
niceman/interface/stop.py
niceman/interface/test.py
niceman/interface/tests/__init__.py
niceman/interface/tests/sample_reprozip_output_large.yml
niceman/interface/tests/sample_reprozip_output_small.yml
niceman/interface/tests/test_backend_parameters.py
niceman/interface/tests/test_create.py
niceman/interface/tests/test_delete.py
niceman/interface/tests/test_diff.py
niceman/interface/tests/test_execute.py
niceman/interface/tests/test_install.py
niceman/interface/tests/test_login.py
niceman/interface/tests/test_ls.py
niceman/interface/tests/test_retrace.py
niceman/interface/tests/test_retrace_packages.py
niceman/interface/tests/test_sequence.py
niceman/interface/tests/files/diff_1.yaml
niceman/interface/tests/files/diff_2.yaml
niceman/interface/tests/files/empty.yaml
niceman/interface/tests/files/multi_debian.yaml
niceman/resource/__init__.py
niceman/resource/aws_ec2.py
niceman/resource/base.py
niceman/resource/docker_container.py
niceman/resource/session.py
niceman/resource/shell.py
niceman/resource/singularity.py
niceman/resource/ssh.py
niceman/resource/tests/__init__.py
niceman/resource/tests/conftest.py
niceman/resource/tests/test_aws_ec2.py
niceman/resource/tests/test_base.py
niceman/resource/tests/test_docker_container.py
niceman/resource/tests/test_session.py
niceman/resource/tests/test_shell.py
niceman/resource/tests/test_singularity.py
niceman/resource/tests/test_ssh.py
niceman/support/__init__.py
niceman/support/configparserinc.py
niceman/support/constraints.py
niceman/support/digests.py
niceman/support/exceptions.py
niceman/support/external_versions.py
niceman/support/globbedpaths.py
niceman/support/param.py
niceman/support/protocol.py
niceman/support/distributions/__init__.py
niceman/support/distributions/debian.py
niceman/support/distributions/tests/__init__.py
niceman/support/distributions/tests/test_debian.py
niceman/support/tests/__init__.py
niceman/support/tests/test_digests.py
niceman/support/tests/test_external_versions.py
niceman/support/tests/test_globbedpaths.py
niceman/tests/__init__.py
niceman/tests/constants.py
niceman/tests/fixtures.py
niceman/tests/test_api.py
niceman/tests/test_cmd.py
niceman/tests/test_cmdline_main.py
niceman/tests/test_config.py
niceman/tests/test_constraints.py
niceman/tests/test_dochelpers.py
niceman/tests/test_formatters.py
niceman/tests/test_installed.py
niceman/tests/test_interface.py
niceman/tests/test_log.py
niceman/tests/test_protocols.py
niceman/tests/test_tests_utils.py
niceman/tests/test_utils.py
niceman/tests/utils.py
niceman/tests/files/niceman.cfg
niceman/ui/__init__.py
niceman/ui/base.py
niceman/ui/dialog.py
niceman/ui/progressbars.py
niceman/ui/tests/__init__.py
niceman/ui/tests/test_base.py
niceman/ui/tests/test_dialog.py
tools/cmdline-completion
tools/dtime
tools/mkcontrib
tools/ci/build_install_apt