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INDELible V1.03 by Will Fletcher : Simulation began at: Fri Sep 23 10:45:33 2016
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  * Simulation completed. Whole batch took: 0.834368 seconds.

INDELible V1.03 Simulations completed at: Fri Sep 23 10:45:34 2016

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 Original Control File 

-----------------------


[TYPE] NUCLEOTIDE 1 

[SETTINGS]
    [fastaextension] fasta  

[MODEL] csSim_unlinked_1
    [submodel] GTR 0.109516 0.013689 0.009028 0.028409 0.038962 
    [statefreq] 0.132042 0.213937 0.306843 0.347177 
[rates] 0 13645093.296883 0 

[MODEL] csSim_unlinked_2
    [submodel] GTR 0.103748 0.009649 0.033095 0.016424 0.018115 
    [statefreq] 0.116583 0.551139 0.046156 0.286122 
[rates] 0 2582861.196940 0 

[MODEL] csSim_unlinked_3
    [submodel] GTR 0.068616 0.002508 0.007574 0.054862 0.031661 
    [statefreq] 0.249637 0.026814 0.367072 0.356478 
[rates] 0 11392664.705552 0 

[MODEL] csSim_unlinked_4
    [submodel] GTR 0.075996 0.006950 0.009988 0.050558 0.023396 
    [statefreq] 0.012728 0.514106 0.285839 0.187328 
[rates] 0 2378197.006932 0 

[MODEL] csSim_unlinked_5
    [submodel] GTR 0.091771 0.024481 0.010684 0.054058 0.034934 
    [statefreq] 0.101678 0.555403 0.006566 0.336352 
[rates] 0 8264686.447782 0 

[MODEL] csSim_unlinked_6
    [submodel] GTR 0.104553 0.027419 0.062273 0.008083 0.037089 
    [statefreq] 0.282761 0.226138 0.401237 0.089864 
[rates] 0 399667.540896 0 

[MODEL] csSim_unlinked_7
    [submodel] GTR 0.056166 0.012611 0.016155 0.037373 0.044008 
    [statefreq] 0.068389 0.107638 0.092695 0.731278 
[rates] 0 3819203.302353 0 

[MODEL] csSim_unlinked_8
    [submodel] GTR 0.088079 0.004060 0.021790 0.050587 0.044128 
    [statefreq] 0.303257 0.082620 0.212616 0.401506 
[rates] 0 1794121.930798 0 

[MODEL] csSim_unlinked_9
    [submodel] GTR 0.119932 0.009085 0.030506 0.039305 0.037589 
    [statefreq] 0.264470 0.117542 0.579570 0.038418 
[rates] 0 2924686.449912 0 

[MODEL] csSim_unlinked_10
    [submodel] GTR 0.069842 0.011984 0.019882 0.054090 0.037938 
    [statefreq] 0.110903 0.373242 0.039680 0.476175 
[rates] 0 6371602.029806 0 


[TREE] T01 (((((5_0_0:0.00026997,5_0_4:0.00021204):0.00053035,5_0_1:0.00084235):0.00669899,((5_0_2:0.00000588,5_0_5:0.00000531):0.00032549,5_0_3:0.00034150):0.00668213):0.39092538,(((((4_0_5:0.00096138,(4_0_1:0.00002022,4_0_3:0.00002252):0.00092302):0.00014008,4_0_4:0.00125093):0.00000451,4_0_0:0.00115933):0.00116938,4_0_2:0.00216510):0.39084943,((((1_0_3:0.00290480,(1_0_0:0.00125837,(1_0_5:0.00033545,(1_0_1:0.00015538,1_0_4:0.00016404):0.00014530):0.00097142):0.00140117):0.00142957,1_0_2:0.00455611):0.02017255,(((2_0_1:0.00011924,2_0_4:0.00013548):0.00070911,2_0_2:0.00077229):0.00249361,(2_0_0:0.00053381,(2_0_3:0.00050859,2_0_5:0.00050902):0.00001801):0.00261922):0.01847114):0.37170874,((3_0_1:0.00113237,3_0_3:0.00110379):0.00386350,((3_0_0:0.00046676,(3_0_4:0.00023270,3_0_5:0.00021891):0.00015730):0.00165724,3_0_2:0.00198866):0.00287334):0.33792733):0.00487885):0.01561516):0.34386185,0_0_0:0.80162202);
[TREE] T02 (0_0_0:0.56602486,(((5_0_1:0.00048050,(5_0_4:0.00047444,((5_0_5:0.00003785,5_0_2:0.00003520):0.00003537,5_0_0:0.00006784):0.00036365):0.00005940):0.00244677,5_0_3:0.00262347):0.31077845,((((((4_0_1:0.00006200,4_0_0:0.00005859):0.00015562,(4_0_2:0.00009431,4_0_4:0.00008060):0.00013716):0.00075719,4_0_5:0.00094908):0.00266445,4_0_3:0.00340879):0.33065579,(((3_0_2:0.00019018,(3_0_3:0.00004160,3_0_1:0.00004543):0.00011602):0.00237072,(3_0_4:0.00018861,3_0_5:0.00019112):0.00212212):0.00009484,3_0_0:0.00240214):0.31123480):0.00080404,(((((2_0_1:0.00003466,2_0_5:0.00004010):0.00046488,2_0_2:0.00045835):0.00055675,2_0_3:0.00092736):0.00003363,(2_0_0:0.00047703,2_0_4:0.00049219):0.00064268):0.01194845,((1_0_0:0.00024066,1_0_5:0.00025805):0.00433485,(1_0_4:0.00103360,((1_0_3:0.00005591,1_0_1:0.00005585):0.00079429,1_0_2:0.00082293):0.00015527):0.00417483):0.00937064):0.26217959):0.02347634):0.32546013);
[TREE] T03 ((((((3_0_4:0.00058623,3_0_3:0.00063421):0.00057763,((3_0_5:0.00017609,3_0_1:0.00015582):0.00041270,3_0_0:0.00060583):0.00059996):0.00346126,3_0_2:0.00426179):0.48208316,(((((4_0_4:0.00010445,4_0_3:0.00009904):0.00021786,(4_0_0:0.00009266,4_0_1:0.00008661):0.00025665):0.00153022,4_0_5:0.00162740):0.00025441,4_0_2:0.00231180):0.39288164,(((2_0_5:0.00247648,(2_0_2:0.00096885,(2_0_0:0.00027087,2_0_1:0.00028176):0.00075295):0.00133227):0.00008207,(2_0_3:0.00005338,2_0_4:0.00005020):0.00252240):0.01980535,(1_0_4:0.00581961,((1_0_3:0.00425189,(1_0_0:0.00147964,1_0_1:0.00118752):0.00336699):0.00015705,(1_0_2:0.00006005,1_0_5:0.00005313):0.00430158):0.00037009):0.01677338):0.44498381):0.00913931):0.01686455,((5_0_1:0.00237389,((5_0_3:0.00024036,5_0_4:0.00026357):0.00025365,5_0_2:0.00047528):0.00231711):0.00103020,(5_0_5:0.00101530,5_0_0:0.00094771):0.00298988):0.49947549):0.49894881,0_0_0:0.86804947);
[TREE] T04 (0_0_0:0.99503013,(((((3_0_1:0.00170252,3_0_3:0.00177740):0.00415369,(3_0_5:0.00150665,((3_0_0:0.00016421,3_0_2:0.00014562):0.00120222,3_0_4:0.00118915):0.00043415):0.00327058):0.41601714,(((2_0_4:0.00063074,(2_0_2:0.00040029,2_0_3:0.00041130):0.00027063):0.01099941,((2_0_0:0.00117132,2_0_5:0.00133767):0.00420676,2_0_1:0.00607416):0.00434217):0.01889432,(1_0_0:0.00349889,((1_0_2:0.00012291,1_0_4:0.00010818):0.00138061,(1_0_3:0.00042347,(1_0_1:0.00013199,1_0_5:0.00011629):0.00028617):0.00103754):0.00182145):0.02583136):0.46144155):0.00210474,((4_0_2:0.00141784,4_0_1:0.00136899):0.00453757,((4_0_5:0.00084993,4_0_0:0.00086763):0.00244582,(4_0_3:0.00178153,4_0_4:0.00155904):0.00161845):0.00245097):0.45047404):0.02213106,((5_0_3:0.00769388,((5_0_2:0.00032186,5_0_1:0.00035081):0.00302933,5_0_0:0.00278224):0.00394900):0.00407615,(5_0_5:0.00036011,5_0_4:0.00040421):0.01066063):0.48610213):0.46873271);
[TREE] T05 (((((((3_0_0:0.00129713,3_0_2:0.00136805):0.00137828,(3_0_1:0.00106033,3_0_4:0.00113861):0.00175922):0.00202755,(3_0_3:0.00050620,3_0_5:0.00054164):0.00435246):0.46587289,(((2_0_1:0.00104870,(2_0_2:0.00055631,2_0_0:0.00057587):0.00047318):0.00167363,(2_0_5:0.00154944,(2_0_4:0.00134112,2_0_3:0.00136741):0.00008503):0.00102960):0.02104540,((1_0_1:0.00123499,1_0_0:0.00129531):0.01176739,((1_0_3:0.00068076,1_0_2:0.00069927):0.00054133,(1_0_4:0.00077402,1_0_5:0.00070778):0.00065424):0.01228479):0.00929948):0.46261550):0.00139545,(((4_0_0:0.00087377,(4_0_4:0.00034840,4_0_1:0.00034948):0.00057031):0.00086681,(4_0_2:0.00006026,4_0_5:0.00005802):0.00158033):0.00264976,4_0_3:0.00435846):0.40130386):0.02466917,(((((5_0_0:0.00016079,5_0_1:0.00014660):0.00145751,5_0_2:0.00159995):0.00036440,5_0_3:0.00185200):0.00011864,5_0_5:0.00230358):0.00053940,5_0_4:0.00237180):0.44094498):0.47350410,0_0_0:1.07630942);
[TREE] T06 (((((5_0_3:0.00081017,(5_0_1:0.00024724,5_0_0:0.00022615):0.00048347):0.00014035,(5_0_2:0.00087322,5_0_4:0.00078198):0.00012910):0.00369441,5_0_5:0.00390032):0.37449804,((((((1_0_4:0.00001027,1_0_5:0.00001023):0.00081773,(1_0_3:0.00030978,1_0_1:0.00035563):0.00045330):0.00111759,(1_0_2:0.00001751,1_0_0:0.00001480):0.00167130):0.01837645,(2_0_0:0.00602421,(((2_0_1:0.00114984,2_0_5:0.00103668):0.00020269,(2_0_4:0.00054157,2_0_2:0.00058758):0.00090494):0.00006996,2_0_3:0.00133684):0.00422589):0.01682990):0.30664974,((4_0_0:0.00191154,4_0_2:0.00158789):0.00057886,((4_0_4:0.00063560,(4_0_1:0.00041282,4_0_3:0.00043006):0.00018679):0.00107015,4_0_5:0.00179056):0.00056968):0.32832430):0.00196927,(3_0_2:0.01330371,((3_0_5:0.00082096,(3_0_1:0.00050062,3_0_4:0.00054485):0.00025216):0.00298802,(3_0_3:0.00079748,3_0_0:0.00082573):0.00345404):0.00890122):0.37405056):0.01789454):0.39215928,0_0_0:0.79629313);
[TREE] T07 (0_0_0:0.93126070,((((((4_0_3:0.00031181,4_0_4:0.00031157):0.00188867,(4_0_2:0.00109013,4_0_0:0.00103205):0.00107463):0.00109067,(4_0_5:0.00049093,4_0_1:0.00048324):0.00270356):0.46576094,((((1_0_2:0.00008328,1_0_0:0.00009805):0.00125792,1_0_3:0.00144661):0.00050026,((1_0_1:0.00030213,1_0_5:0.00028993):0.00120767,1_0_4:0.00144304):0.00040082):0.02462689,((2_0_4:0.00057208,(2_0_0:0.00047884,2_0_3:0.00050178):0.00010852):0.00830447,(2_0_1:0.00051780,(2_0_5:0.00036402,2_0_2:0.00034767):0.00013309):0.00905211):0.01627427):0.42392828):0.00246795,(((3_0_2:0.00134883,3_0_1:0.00121993):0.00005764,(3_0_5:0.00098683,(3_0_3:0.00023490,3_0_0:0.00023030):0.00066123):0.00043029):0.00014911,3_0_4:0.00170448):0.41059000):0.02100064,((5_0_0:0.00044531,(5_0_4:0.00019696,(5_0_2:0.00003757,5_0_5:0.00004256):0.00012525):0.00024610):0.00777443,(5_0_3:0.00202906,5_0_1:0.00180777):0.00732107):0.43781504):0.44085431);
[TREE] T08 (0_0_0:0.86400729,(((((2_0_0:0.00075334,2_0_3:0.00077526):0.00112558,((2_0_1:0.00034764,2_0_5:0.00034180):0.00141682,(2_0_2:0.00123166,2_0_4:0.00127875):0.00049217):0.00008269):0.01448284,(((1_0_3:0.00084109,1_0_4:0.00082688):0.00308681,((1_0_5:0.00005574,1_0_2:0.00005046):0.00068025,1_0_0:0.00078147):0.00265210):0.00803324,1_0_1:0.01365147):0.00422984):0.33565753,((((4_0_4:0.00083699,4_0_0:0.00087517):0.00308219,4_0_3:0.00419720):0.00082226,((4_0_5:0.00054003,4_0_1:0.00054435):0.00151239,4_0_2:0.00196793):0.00327327):0.37320605,((3_0_1:0.00172049,(((3_0_2:0.00012934,3_0_5:0.00013513):0.00007435,3_0_0:0.00022422):0.00091621,3_0_3:0.00095798):0.00051434):0.00261493,3_0_4:0.00468466):0.33123766):0.00565541):0.01348655,(((5_0_2:0.00044180,5_0_4:0.00043015):0.00011040,5_0_0:0.00052690):0.00492739,((5_0_1:0.00000459,5_0_3:0.00000466):0.00002486,5_0_5:0.00003064):0.00536896):0.31563299):0.44038448);
[TREE] T09 (((((((1_0_1:0.00089675,(1_0_2:0.00013604,1_0_4:0.00013609):0.00059343):0.00260005,(1_0_0:0.00060549,(1_0_3:0.00003912,1_0_5:0.00003995):0.00050440):0.00257475):0.01350862,(((2_0_1:0.00019446,2_0_3:0.00020879):0.00018606,(2_0_0:0.00023987,2_0_5:0.00024749):0.00015404):0.00485615,(2_0_2:0.00187540,2_0_4:0.00156397):0.00291355):0.01147448):0.34537232,(4_0_2:0.00646607,(4_0_4:0.00233893,((4_0_0:0.00022024,4_0_3:0.00022152):0.00217951,(4_0_1:0.00012510,4_0_5:0.00011044):0.00214617):0.00036833):0.00429744):0.34964307):0.00800205,((3_0_3:0.00057238,3_0_1:0.00061891):0.00200140,(3_0_4:0.00239614,((3_0_5:0.00104325,3_0_2:0.00113586):0.00108950,3_0_0:0.00199867):0.00017591):0.00029647):0.39948647):0.01570217,((((5_0_5:0.00009281,5_0_0:0.00008190):0.00086231,(5_0_1:0.00003224,5_0_2:0.00003202):0.00098055):0.00002886,5_0_4:0.00095879):0.00122394,5_0_3:0.00235658):0.34829475):0.42125060,0_0_0:0.61933852);
[TREE] T10 (0_0_0:0.80164743,(((5_0_0:0.00466535,((5_0_5:0.00053899,5_0_3:0.00054114):0.00111009,5_0_4:0.00148861):0.00317978):0.01484496,(5_0_1:0.00004633,5_0_2:0.00004584):0.01968552):0.38250846,((((4_0_1:0.00025806,4_0_4:0.00030543):0.00395450,(((4_0_3:0.00000918,4_0_0:0.00000911):0.00048262,4_0_5:0.00046105):0.00002014,4_0_2:0.00049664):0.00438173):0.34186104,(((((2_0_0:0.00092358,2_0_5:0.00085537):0.00032168,2_0_2:0.00119091):0.00340401,(2_0_1:0.00001012,2_0_4:0.00001001):0.00496991):0.00816484,2_0_3:0.01175200):0.00646801,(((1_0_0:0.00023631,1_0_1:0.00027554):0.00003474,1_0_3:0.00032713):0.00328509,((1_0_4:0.00088445,1_0_2:0.00095998):0.00043972,1_0_5:0.00138683):0.00298329):0.01490177):0.39024297):0.00151835,(((3_0_5:0.00157127,3_0_1:0.00167713):0.00132956,3_0_2:0.00249080):0.00237100,(3_0_3:0.00033904,(3_0_4:0.00023825,3_0_0:0.00025761):0.00010297):0.00486776):0.35417863):0.02427832):0.42658767);

[PARTITIONS] csSimUnlinked_01 [T01 csSim_unlinked_1 500]
[PARTITIONS] csSimUnlinked_02 [T02 csSim_unlinked_2 500]
[PARTITIONS] csSimUnlinked_03 [T03 csSim_unlinked_3 500]
[PARTITIONS] csSimUnlinked_04 [T04 csSim_unlinked_4 500]
[PARTITIONS] csSimUnlinked_05 [T05 csSim_unlinked_5 500]
[PARTITIONS] csSimUnlinked_06 [T06 csSim_unlinked_6 500]
[PARTITIONS] csSimUnlinked_07 [T07 csSim_unlinked_7 500]
[PARTITIONS] csSimUnlinked_08 [T08 csSim_unlinked_8 500]
[PARTITIONS] csSimUnlinked_09 [T09 csSim_unlinked_9 500]
[PARTITIONS] csSimUnlinked_10 [T10 csSim_unlinked_10 500]

[EVOLVE] csSimUnlinked_01 1 data_01
csSimUnlinked_02 1 data_02
csSimUnlinked_03 1 data_03
csSimUnlinked_04 1 data_04
csSimUnlinked_05 1 data_05
csSimUnlinked_06 1 data_06
csSimUnlinked_07 1 data_07
csSimUnlinked_08 1 data_08
csSimUnlinked_09 1 data_09
csSimUnlinked_10 1 data_10
