[general]
path=.
output_folder_name=NGSphy_output
ploidy=1
[data]
inputmode=3
gene_tree_file=t3.tree
anchor_sequence_file=my_anchor_sequence.fasta
anchor_tip_label=2_0_0
indelible_control_file=control.3.txt
[coverage]
experiment=F:100
[ngs-read-counts]
read_counts_error=0.1
reference_alleles_file=my_reference_allele_file.txt
[execution]
environment=bash
running_times=off
threads=2
