.gitignore
.pre-commit-config.yaml
LICENSE
Makefile
README.md
dev-requirements.txt
requirements.txt
setup.cfg
setup.py
.github/workflows/ci.yml
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
docs/requirements.txt
ngs_tools/__init__.py
ngs_tools/bam.py
ngs_tools/fasta.py
ngs_tools/fastq.py
ngs_tools/gtf.py
ngs_tools/logging.py
ngs_tools/sequence.py
ngs_tools/utils.py
ngs_tools.egg-info/PKG-INFO
ngs_tools.egg-info/SOURCES.txt
ngs_tools.egg-info/dependency_links.txt
ngs_tools.egg-info/not-zip-safe
ngs_tools.egg-info/requires.txt
ngs_tools.egg-info/top_level.txt
tests/__init__.py
tests/mixins.py
tests/test_bam.py
tests/test_fasta.py
tests/test_fastq.py
tests/test_gtf.py
tests/test_sequence.py
tests/test_utils.py
tests/fixtures/bam/small.bam
tests/fixtures/fasta/cdna.fa
tests/fixtures/fasta/intron.fa
tests/fixtures/fasta/not_sorted.fa
tests/fixtures/fasta/small.fa
tests/fixtures/fastq/small.fastq
tests/fixtures/fastq/small.fastq.gz
tests/fixtures/fastq/small2.fastq
tests/fixtures/gtf/not_sorted.gtf
tests/fixtures/sequence/qualities.txt
tests/fixtures/sequence/sequences.txt