numpy>=1.15.0
scipy>=1.0.0
fastcluster
pandas>=0.25.0
matplotlib<3.1.1,>=2.1.1
seaborn>=0.9.0
parmap>=1.5.1
pysam>=0.13
pybedtools>=0.7.10
scikit-learn>=0.19.1
statsmodels>=0.8.0
patsy>=0.4.1
tqdm>=4.19.5
peppy>=0.22.2
divvy>=0.4.0
attmap>=0.12.9
requests
jinja2>=2.10.1
rpy2
tzlocal
natsort

[single_cell]
scanpy
scanorama
phate
scvelo
loompy
fbpca
MulticoreTSNE
python-igraph
louvain>=0.6
leidenalg
fa2

[testing]
pytest>=4.4.0
coverage>=4.5.2
pytest-cov
codecov
codacy-coverage
pytest-xdist
