.gitignore
.gitpod.yml
.travis.yml
Dockerfile
LICENCE.txt
Makefile
Manifest.in
README.md
setup.cfg
setup.py
.github/workflows/test.yaml
docs/Makefile
docs/source/api.rst
docs/source/changelog.rst
docs/source/concepts.rst
docs/source/conf.py
docs/source/examples.rst
docs/source/index.rst
docs/source/intro.rst
docs/source/log_config.rst
docs/source/manager_programs.rst
docs/source/recipes.rst
docs/source/report.rst
ngs_toolkit/__init__.py
ngs_toolkit/_version.py
ngs_toolkit/analysis.py
ngs_toolkit/atacseq.py
ngs_toolkit/chipseq.py
ngs_toolkit/cnv.py
ngs_toolkit/constants.py
ngs_toolkit/decorators.py
ngs_toolkit/general.py
ngs_toolkit/graphics.py
ngs_toolkit/parsers.py
ngs_toolkit/project_manager.py
ngs_toolkit/rnaseq.py
ngs_toolkit/track_manager.py
ngs_toolkit/utils.py
ngs_toolkit.egg-info/PKG-INFO
ngs_toolkit.egg-info/SOURCES.txt
ngs_toolkit.egg-info/dependency_links.txt
ngs_toolkit.egg-info/entry_points.txt
ngs_toolkit.egg-info/requires.txt
ngs_toolkit.egg-info/top_level.txt
ngs_toolkit/config/default.yaml
ngs_toolkit/config/example.yaml
ngs_toolkit/recipes/__init__.py
ngs_toolkit/recipes/call_peaks.py
ngs_toolkit/recipes/deseq2.py
ngs_toolkit/recipes/enrichr.py
ngs_toolkit/recipes/lola.py
ngs_toolkit/recipes/merge_signal.py
ngs_toolkit/recipes/ngs_analysis.py
ngs_toolkit/recipes/region_enrichment.py
ngs_toolkit/recipes/region_set_frip.py
ngs_toolkit/templates/__init__.py
ngs_toolkit/templates/report.html
ngs_toolkit/tests/__init__.py
ngs_toolkit/tests/conftest.py
ngs_toolkit/tests/data_generator.py
ngs_toolkit/tests/test_analysis.py
ngs_toolkit/tests/test_atacseq_analysis.py
ngs_toolkit/tests/test_config.py
ngs_toolkit/tests/test_decorators.py
ngs_toolkit/tests/test_differential_analysis.py
ngs_toolkit/tests/test_differential_enrichment.py
ngs_toolkit/tests/test_general.py
ngs_toolkit/tests/test_install.py
ngs_toolkit/tests/test_logger.py
ngs_toolkit/tests/test_plot_differential.py
ngs_toolkit/tests/test_plot_differential_enrichment.py
ngs_toolkit/tests/test_project_manager.py
ngs_toolkit/tests/test_regression_tests.py
ngs_toolkit/tests/test_report.py
ngs_toolkit/tests/test_rnaseq_analysis.py
ngs_toolkit/tests/test_sample_input_files.py
ngs_toolkit/tests/test_unsupervised_analysis.py
requirements/requirements.single_cell.txt
requirements/requirements.test.txt
requirements/requirements.txt