Metadata-Version: 2.0
Name: ngs-toolkit
Version: 0.1.4
Summary: A toolkit for NGS analysis with Python.
Home-page: https://github.com/afrendeiro/toolkit
Author: Andre Rendeiro
Author-email: afrendeiro@gmail.com
License: GPL3
Description-Content-Type: UNKNOWN
Keywords: bioinformatics,sequencing,ngs,ngs analysis,ATAC-Seq,ChIP-seq,RNA-seq,project management
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 2.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: numpy (>=1.14.0)
Requires-Dist: scipy (>=1.0.0)
Requires-Dist: fastcluster
Requires-Dist: pandas (>=0.22.0)
Requires-Dist: matplotlib (>=2.1.1)
Requires-Dist: seaborn (>=0.8.1)
Requires-Dist: parmap (>=1.5.1)
Requires-Dist: pysam (>=0.13)
Requires-Dist: pybedtools (>=0.7.10)
Requires-Dist: scikit-learn (>=0.19.1)
Requires-Dist: statsmodels (>=0.8.0)
Requires-Dist: patsy (>=0.4.1)
Requires-Dist: tqdm (>=4.19.5)

[![Documentation Status](https://readthedocs.org/projects/ngs-toolkit/badge/?version=latest)](http://ngs-toolkit.readthedocs.io/en/latest/?badge=latest) [![PyPI version](https://badge.fury.io/py/ngs-toolkit.svg)](https://badge.fury.io/py/ngs-toolkit) [![Documentation Status](https://landscape.io/github/afrendeiro/toolkit/master/landscape.png)](https://landscape.io/github/afrendeiro/toolkit/master)



## toolkit

This is my NGS analysis toolkit: ``ngs_toolkit``.

It contains most code I've been using in the last 2-3 years in various projects and hopefully is of interest to someone.

Head to the [documentation](http://ngs-toolkit.readthedocs.io/) to see how to install and use the toolkit, and have a look at the catalogue of available functions.

Install with:

```
pip install ngs-toolkit
```
You might need to add a ``--user`` flag to the above command.


