MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
destruct/__init__.py
destruct/_version.py
destruct/annotation.py
destruct/balanced.py
destruct/create_ref_data.py
destruct/defaultconfig.py
destruct/predict_breaks.py
destruct/score_stats.py
destruct/somatic.py
destruct/tasks.py
destruct/workflow.py
destruct/benchmark/__init__.py
destruct/benchmark/create_breakpoint_simulation.py
destruct/benchmark/create_chromosome_simulation.py
destruct/benchmark/destruct_bam_test.py
destruct/benchmark/destruct_sim_test.py
destruct/benchmark/destruct_test.py
destruct/benchmark/generate_bam.py
destruct/benchmark/realign_test.py
destruct/benchmark/setup_tools.py
destruct/benchmark/align/__init__.py
destruct/benchmark/align/bwa/__init__.py
destruct/benchmark/align/bwa/tasks.py
destruct/benchmark/align/bwa/workflow.py
destruct/benchmark/wrappers/__init__.py
destruct/benchmark/wrappers/tasks.py
destruct/benchmark/wrappers/utils.py
destruct/benchmark/wrappers/delly/__init__.py
destruct/benchmark/wrappers/delly/tasks.py
destruct/benchmark/wrappers/delly/workflow.py
destruct/benchmark/wrappers/destruct/__init__.py
destruct/benchmark/wrappers/destruct/tasks.py
destruct/benchmark/wrappers/destruct/workflow.py
destruct/benchmark/wrappers/lumpysv/__init__.py
destruct/benchmark/wrappers/lumpysv/tasks.py
destruct/benchmark/wrappers/lumpysv/workflow.py
destruct/data/hg18_chr_map.tsv
destruct/data/hg19_chr_map.tsv
destruct/data/hg38_chr_map.tsv
destruct/ui/__init__.py
destruct/ui/create_ref_data.py
destruct/ui/extract_somatic.py
destruct/ui/main.py
destruct/ui/run.py
destruct/utils/__init__.py
destruct/utils/download.py
destruct/utils/misc.py
destruct/utils/plots.py
destruct/utils/seq.py
destruct/utils/streaming.py
ngs_destruct.egg-info/PKG-INFO
ngs_destruct.egg-info/SOURCES.txt
ngs_destruct.egg-info/dependency_links.txt
ngs_destruct.egg-info/entry_points.txt
ngs_destruct.egg-info/requires.txt
ngs_destruct.egg-info/top_level.txt