Metadata-Version: 2.1
Name: nfer-image
Version: 0.2
Summary: utilities for working with images
Home-page: UNKNOWN
Author: Martin Kang
Author-email: martin@nference.net
License: UNKNOWN
Platform: UNKNOWN
Description-Content-Type: text/x-rst
Requires-Dist: matplotlib
Requires-Dist: numpy
Requires-Dist: opencv-python
Requires-Dist: boto3
Requires-Dist: tqdm
Requires-Dist: pathlib
Requires-Dist: scikit-image
Requires-Dist: sklearn
Requires-Dist: pandas
Requires-Dist: tensorflow

# Utility module for working with images

## Installation
from source:
```sh
cd nfer_image
pip install .
```

## HPA Utility Tools (hpa_utils)
- image loading & download utility from s3 bucket
- image download from specific s3 bucket
- image save (pyplot based)
- image tiling
- stain estimation
- tissue mask generation

## Embedding Tools
- CNN bottleneck/fully-connected layer extraction

## Clustering Tools
- TSNE generation from image embeddings



