LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
nf_core/__init__.py
nf_core/__main__.py
nf_core/bump_version.py
nf_core/create.py
nf_core/download.py
nf_core/launch.py
nf_core/licences.py
nf_core/list.py
nf_core/schema.py
nf_core/sync.py
nf_core/utils.py
nf_core.egg-info/PKG-INFO
nf_core.egg-info/SOURCES.txt
nf_core.egg-info/dependency_links.txt
nf_core.egg-info/entry_points.txt
nf_core.egg-info/not-zip-safe
nf_core.egg-info/requires.txt
nf_core.egg-info/top_level.txt
nf_core/lint/__init__.py
nf_core/lint/actions_awsfulltest.py
nf_core/lint/actions_awstest.py
nf_core/lint/actions_ci.py
nf_core/lint/actions_schema_validation.py
nf_core/lint/conda_dockerfile.py
nf_core/lint/conda_env_yaml.py
nf_core/lint/files_exist.py
nf_core/lint/files_unchanged.py
nf_core/lint/merge_markers.py
nf_core/lint/nextflow_config.py
nf_core/lint/pipeline_name_conventions.py
nf_core/lint/pipeline_todos.py
nf_core/lint/readme.py
nf_core/lint/schema_lint.py
nf_core/lint/schema_params.py
nf_core/lint/template_strings.py
nf_core/lint/version_consistency.py
nf_core/module-template/software/functions.nf
nf_core/module-template/software/main.nf
nf_core/module-template/software/meta.yml
nf_core/module-template/tests/main.nf
nf_core/module-template/tests/test.yml
nf_core/modules/__init__.py
nf_core/modules/create.py
nf_core/modules/lint.py
nf_core/modules/pipeline_modules.py
nf_core/modules/test_yml_builder.py
nf_core/pipeline-template/.gitattributes
nf_core/pipeline-template/.gitignore
nf_core/pipeline-template/CHANGELOG.md
nf_core/pipeline-template/CODE_OF_CONDUCT.md
nf_core/pipeline-template/Dockerfile
nf_core/pipeline-template/LICENSE
nf_core/pipeline-template/README.md
nf_core/pipeline-template/environment.yml
nf_core/pipeline-template/main.nf
nf_core/pipeline-template/nextflow.config
nf_core/pipeline-template/nextflow_schema.json
nf_core/pipeline-template/.github/.dockstore.yml
nf_core/pipeline-template/.github/CONTRIBUTING.md
nf_core/pipeline-template/.github/PULL_REQUEST_TEMPLATE.md
nf_core/pipeline-template/.github/markdownlint.yml
nf_core/pipeline-template/.github/ISSUE_TEMPLATE/bug_report.md
nf_core/pipeline-template/.github/ISSUE_TEMPLATE/config.yml
nf_core/pipeline-template/.github/ISSUE_TEMPLATE/feature_request.md
nf_core/pipeline-template/.github/workflows/awsfulltest.yml
nf_core/pipeline-template/.github/workflows/awstest.yml
nf_core/pipeline-template/.github/workflows/branch.yml
nf_core/pipeline-template/.github/workflows/ci.yml
nf_core/pipeline-template/.github/workflows/linting.yml
nf_core/pipeline-template/.github/workflows/linting_comment.yml
nf_core/pipeline-template/.github/workflows/push_dockerhub_dev.yml
nf_core/pipeline-template/.github/workflows/push_dockerhub_release.yml
nf_core/pipeline-template/assets/email_template.html
nf_core/pipeline-template/assets/email_template.txt
nf_core/pipeline-template/assets/multiqc_config.yaml
nf_core/pipeline-template/assets/sendmail_template.txt
nf_core/pipeline-template/bin/markdown_to_html.py
nf_core/pipeline-template/bin/scrape_software_versions.py
nf_core/pipeline-template/conf/base.config
nf_core/pipeline-template/conf/igenomes.config
nf_core/pipeline-template/conf/test.config
nf_core/pipeline-template/conf/test_full.config
nf_core/pipeline-template/docs/README.md
nf_core/pipeline-template/docs/output.md
nf_core/pipeline-template/docs/usage.md
nf_core/pipeline-template/lib/Headers.groovy
nf_core/pipeline-template/lib/NfcoreSchema.groovy
nf_core/pipeline-template/lib/nfcore_external_java_deps.jar