LICENSE.txt
README.md
setup.py
augur/__init__.py
augur/__main__.py
augur/__version__.py
augur/align.py
augur/ancestral.py
augur/clades.py
augur/distance.py
augur/export.py
augur/filenames.py
augur/filter.py
augur/frequencies.py
augur/frequency_estimators.py
augur/lbi.py
augur/mask.py
augur/parse.py
augur/reconstruct_sequences.py
augur/refine.py
augur/sequence_traits.py
augur/titer_model.py
augur/titers.py
augur/traits.py
augur/translate.py
augur/tree.py
augur/utils.py
augur/validate.py
augur/version.py
augur/data/colors.tsv
augur/data/geo_regions.tsv
augur/data/lat_longs.tsv
augur/data/schema.json
augur/data/schema_meta.json
augur/data/schema_tree.json
nextstrain_augur.egg-info/PKG-INFO
nextstrain_augur.egg-info/SOURCES.txt
nextstrain_augur.egg-info/dependency_links.txt
nextstrain_augur.egg-info/entry_points.txt
nextstrain_augur.egg-info/requires.txt
nextstrain_augur.egg-info/top_level.txt