bcbio-gff==0.7.*,>=0.7.0
biopython!=1.77,!=1.78,>=1.67
cvxopt==1.*,>=1.1.9
isodate==0.6.*
jsonschema==3.*,>=3.0.0
networkx==2.*,>=2.5
numpy==1.*
packaging>=19.2
pandas==1.*,>=1.0.0
phylo-treetime==0.10.*,>=0.10.0
pyfastx==0.8.*,>=0.8.4
scipy==1.*
xopen[zstd]==1.*,>=1.7.0

[:python_version < "3.8"]
typing_extensions

[dev]
cram>=0.7
deepdiff>=4.3.2
freezegun>=0.3.15
mypy
nextstrain-sphinx-theme>=2022.5
pandas-stubs==1.*,>=1.0.0
pylint>=1.7.6
pytest>=5.4.1
pytest-cov>=2.8.1
pytest-mock>=2.0.0
recommonmark>=0.5.0
snakemake>=5.4.0
Sphinx>=2.0.1
sphinx-autobuild>=2021.3.14
sphinx-argparse>=0.2.5
sphinx-markdown-tables>=0.0.9
sphinx-rtd-theme>=0.4.3
sphinx-autodoc-typehints>=1.21.4
types-jsonschema==3.*,>=3.0.0
types-setuptools
wheel>=0.32.3
ipdb>=0.10.1
