bcbio-gff==0.6.*,>=0.6.0
biopython!=1.77,!=1.78,>=1.67
jsonschema==3.*,>=3.0.0
packaging>=19.2
pandas==1.*,>=1.0.0
phylo-treetime==0.8.*
xopen==1.*,>=1.0.1

[dev]
cram>=0.7
deepdiff>=4.3.2
freezegun>=0.3.15
nextstrain-sphinx-theme>=2020.3
pylint>=1.7.6
pytest>=5.4.1
pytest-cov>=2.8.1
pytest-mock>=2.0.0
recommonmark>=0.5.0
snakemake>=5.4.0
Sphinx>=2.0.1
sphinx-argparse>=0.2.5
sphinx-markdown-tables>=0.0.9
sphinx-rtd-theme>=0.4.3
wheel>=0.32.3
ipdb>=0.10.1

[full]
cvxopt==1.*,>=1.1.9
matplotlib==2.*,>=2.0
seaborn==0.9.*,>=0.9.0
