LICENSE.txt
README.md
setup.py
augur/__init__.py
augur/__main__.py
augur/__version__.py
augur/align.py
augur/ancestral.py
augur/clades.py
augur/distance.py
augur/export.py
augur/export_v1.py
augur/export_v2.py
augur/filenames.py
augur/filter.py
augur/frequencies.py
augur/frequency_estimators.py
augur/import.py
augur/import_beast.py
augur/lbi.py
augur/mask.py
augur/parse.py
augur/reconstruct_sequences.py
augur/refine.py
augur/sequence_traits.py
augur/titer_model.py
augur/titers.py
augur/traits.py
augur/translate.py
augur/tree.py
augur/utils.py
augur/validate.py
augur/validate_export.py
augur/version.py
augur/data/colors.tsv
augur/data/lat_longs.tsv
augur/data/schema-annotations.json
augur/data/schema-auspice-config-v2.json
augur/data/schema-export-v1-meta.json
augur/data/schema-export-v1-tree.json
augur/data/schema-export-v2.json
augur/util_support/__init__.py
augur/util_support/color_parser.py
augur/util_support/color_parser_line.py
augur/util_support/date_disambiguator.py
augur/util_support/metadata_file.py
augur/util_support/node_data.py
augur/util_support/node_data_file.py
augur/util_support/node_data_reader.py
augur/util_support/shell_command_runner.py
nextstrain_augur.egg-info/PKG-INFO
nextstrain_augur.egg-info/SOURCES.txt
nextstrain_augur.egg-info/dependency_links.txt
nextstrain_augur.egg-info/entry_points.txt
nextstrain_augur.egg-info/requires.txt
nextstrain_augur.egg-info/top_level.txt