.gitignore
.pylintrc
.readthedocs.yml
ACKNOWLEDGMENT.md
AUTHORS.txt
CONTRIBUTING.md
COPYING
COPYING.LESSER
MANIFEST.in
README.rst
setup.py
tox.ini
.github/workflows/run-tox.yml
.github/workflows/upload-pypi.yml
NeuroR.egg-info/PKG-INFO
NeuroR.egg-info/SOURCES.txt
NeuroR.egg-info/dependency_links.txt
NeuroR.egg-info/entry_points.txt
NeuroR.egg-info/requires.txt
NeuroR.egg-info/top_level.txt
doc/Makefile
doc/source/api.rst
doc/source/commands.rst
doc/source/conf.py
doc/source/index.rst
doc/source/_images/BlueBrainNeuroR.png
doc/source/_images/distrib_1d.png
doc/source/cli/cut-plane.rst
doc/source/cli/neuror.rst
doc/source/cli/sanitize.rst
doc/source/cli/unravel.rst
examples/cut-plane-detection.ipynb
examples/repair.ipynb
examples/data/input/to-be-repaired/Neuron_slice.h5
neuror/__init__.py
neuror/axon.py
neuror/cli.py
neuror/full.py
neuror/main.py
neuror/sanitize.py
neuror/unravel.py
neuror/utils.py
neuror/view.py
neuror/zero_diameter_fixer.py
neuror/cut_plane/__init__.py
neuror/cut_plane/cut_leaves.py
neuror/cut_plane/dash.css
neuror/cut_plane/detection.py
neuror/cut_plane/legacy_detection.py
neuror/cut_plane/planes.py
neuror/cut_plane/viewer.py