MANIFEST.in
README.md
feature_description.html
setup.py
neuron_morphology/VERSION.txt
neuron_morphology/__init__.py
neuron_morphology/constants.py
neuron_morphology/lims_apical_queries.py
neuron_morphology/logging_config.ini
neuron_morphology/marker.py
neuron_morphology/morphology.py
neuron_morphology/morphology_builder.py
neuron_morphology/swc_io.py
neuron_morphology.egg-info/PKG-INFO
neuron_morphology.egg-info/SOURCES.txt
neuron_morphology.egg-info/dependency_links.txt
neuron_morphology.egg-info/entry_points.txt
neuron_morphology.egg-info/top_level.txt
neuron_morphology/feature_extractor/__init__.py
neuron_morphology/feature_extractor/__main__.py
neuron_morphology/feature_extractor/_schemas.py
neuron_morphology/feature_extractor/data.py
neuron_morphology/feature_extractor/feature_extraction_run.py
neuron_morphology/feature_extractor/feature_extractor.py
neuron_morphology/feature_extractor/feature_specialization.py
neuron_morphology/feature_extractor/feature_writer.py
neuron_morphology/feature_extractor/mark.py
neuron_morphology/feature_extractor/marked_feature.py
neuron_morphology/feature_extractor/utilities.py
neuron_morphology/features/__init__.py
neuron_morphology/features/axon.py
neuron_morphology/features/axon_cloud.py
neuron_morphology/features/bifurcation_moments.py
neuron_morphology/features/common.py
neuron_morphology/features/compartment_moments.py
neuron_morphology/features/core_features.py
neuron_morphology/features/default_features.py
neuron_morphology/features/dimension.py
neuron_morphology/features/feature_extractor.py
neuron_morphology/features/intrinsic.py
neuron_morphology/features/path.py
neuron_morphology/features/size.py
neuron_morphology/features/soma.py
neuron_morphology/features/branching/__init__.py
neuron_morphology/features/branching/outer_bifurcations.py
neuron_morphology/features/layer/__init__.py
neuron_morphology/features/layer/layer_histogram.py
neuron_morphology/features/layer/layered_point_depths.py
neuron_morphology/features/layer/reference_layer_depths.py
neuron_morphology/features/statistics/__init__.py
neuron_morphology/features/statistics/coordinates.py
neuron_morphology/features/statistics/moments.py
neuron_morphology/features/statistics/overlap.py
neuron_morphology/layered_point_depths/__init__.py
neuron_morphology/layered_point_depths/__main__.py
neuron_morphology/layered_point_depths/_schemas.py
neuron_morphology/snap_polygons/__init__.py
neuron_morphology/snap_polygons/__main__.py
neuron_morphology/snap_polygons/_from_lims.py
neuron_morphology/snap_polygons/_schemas.py
neuron_morphology/snap_polygons/bounding_box.py
neuron_morphology/snap_polygons/geometries.py
neuron_morphology/snap_polygons/image_outputter.py
neuron_morphology/snap_polygons/postgres_source.py
neuron_morphology/snap_polygons/types.py
neuron_morphology/transforms/__init__.py
neuron_morphology/transforms/affine_transform.py
neuron_morphology/transforms/geometry.py
neuron_morphology/transforms/streamline.py
neuron_morphology/transforms/transform_base.py
neuron_morphology/transforms/affine_transformer/__init__.py
neuron_morphology/transforms/affine_transformer/_schemas.py
neuron_morphology/transforms/affine_transformer/apply_affine_transform.py
neuron_morphology/transforms/pia_wm_streamlines/__init__.py
neuron_morphology/transforms/pia_wm_streamlines/_schemas.py
neuron_morphology/transforms/pia_wm_streamlines/calculate_pia_wm_streamlines.py
neuron_morphology/transforms/upright_angle/__init__.py
neuron_morphology/transforms/upright_angle/_schemas.py
neuron_morphology/transforms/upright_angle/compute_angle.py
neuron_morphology/validation/__init__.py
neuron_morphology/validation/bits_validation.py
neuron_morphology/validation/marker_validation.py
neuron_morphology/validation/radius_validation.py
neuron_morphology/validation/report.py
neuron_morphology/validation/resample_validation.py
neuron_morphology/validation/result.py
neuron_morphology/validation/statistics.py
neuron_morphology/validation/structure_validation.py
neuron_morphology/validation/type_validation.py
neuron_morphology/validation/validate_reconstruction.py
neuron_morphology/vis/__init__.py
neuron_morphology/vis/morphovis.py
tests/__init__.py
tests/objects.py
tests/test_morphology_builder.py
tests/test_swc_io.py
tests/test_tree.py
tests/data/17545-6151-X24259-Y36270.swc
tests/data/Ctgf-2A-dgCre-D_Ai14_BT_-245170.06.06.01_539748835_m_pia.swc
tests/data/cortex_morphology_summary.png
tests/data/high_res_morphology_summary.png
tests/data/morphology_summary.png
tests/data/normalized_depth_morphology_summary.png
tests/data/reconstruction_tile_viewer.html
tests/data/reconstruction_tile_viewer_input.csv
tests/data/reconstruction_tile_viewer_input_data.csv
tests/data/test_swc.swc
tests/feature_extractor/test_data.py
tests/feature_extractor/test_default_features.py
tests/feature_extractor/test_dimension_features.py
tests/feature_extractor/test_feature_extraction_run.py
tests/feature_extractor/test_feature_writer.py
tests/feature_extractor/test_intrinsic_features.py
tests/feature_extractor/test_main.py
tests/feature_extractor/test_marked_feature.py
tests/feature_extractor/test_path_features.py
tests/feature_extractor/test_size_features.py
tests/feature_extractor/test_soma_features.py
tests/feature_extractor/test_utilities.py
tests/feature_extractor/branching_features/test_outer_bifurcations.py
tests/feature_extractor/layer_features/test_layer_histogram_features.py
tests/feature_extractor/layer_features/test_reference_layer_depths.py
tests/feature_extractor/statistic_features/test_moment_features.py
tests/feature_extractor/statistic_features/test_overlap_features.py
tests/features/__init__.py
tests/layered_point_depths/__init__.py
tests/layered_point_depths/test_main.py
tests/snap_polygons/__init__.py
tests/snap_polygons/test_bounding_box.py
tests/snap_polygons/test_geometries.py
tests/snap_polygons/test_image_outputter.py
tests/snap_polygons/test_types.py
tests/transforms/test_affine_transform.py
tests/transforms/test_apply_affine.py
tests/transforms/test_calculate_pia_wm_streamlines.py
tests/transforms/test_geometry.py
tests/transforms/test_streamline.py
tests/transforms/test_transform_base.py
tests/transforms/test_upright_angle.py
tests/validation/__init__.py
tests/validation/test_bits_validation.py
tests/validation/test_marker_validation.py
tests/validation/test_radius_validation.py
tests/validation/test_resample_validation.py
tests/validation/test_statistics.py
tests/validation/test_structure_validation.py
tests/validation/test_type_validation.py
tests/validation/test_validate_reconstruction.py
tests/validation/validation_test_case.py