.codecov.yml
.coveragerc
.gitignore
.readthedocs.yml
.travis.yml
ACKNOWLEDGEMENTS.md
AUTHORS.md
LICENSE.txt
MANIFEST.in
README.md
asv.conf.json
package.json
pylintrc
pyproject.toml
requirements_benchmark.txt
requirements_dev.txt
requirements_docs.txt
setup.py
tox.ini
.binder/runtime.txt
apps/__init__.py
apps/morph_check
apps/morph_stats
benchmarks/benchmarks.py
doc/Makefile
doc/clean.sh
doc/make.bat
doc/source/api-dev.rst
doc/source/api-public.rst
doc/source/api.rst
doc/source/apps.rst
doc/source/conf.py
doc/source/definitions.rst
doc/source/dependencies.rst
doc/source/developer.rst
doc/source/documentation.rst
doc/source/examples.rst
doc/source/file_formats.rst
doc/source/index.rst
doc/source/install.rst
doc/source/issue_reporting.rst
doc/source/license.rst
doc/source/morph_check.rst
doc/source/morph_stats.rst
doc/source/quickstart.rst
doc/source/tour.rst
doc/source/tutorial.rst
doc/source/logo/NeuroM.jpg
examples/boxplot.py
examples/density_plot.py
examples/end_to_end_distance.py
examples/extract_distribution.py
examples/features_graph_table.py
examples/get_features.py
examples/histogram.py
examples/neuron_iteration_analysis.py
examples/nl_fst_compat.py
examples/plot_features.py
examples/plot_somas.py
examples/radius_of_gyration.py
examples/section_ids.py
examples/soma_radius_fit.py
examples/synthesis_json.py
ipynb/cut_plane_detection.ipynb
neurom/__init__.py
neurom/exceptions.py
neurom/morphmath.py
neurom/stats.py
neurom/utils.py
neurom/viewer.py
neurom.egg-info/PKG-INFO
neurom.egg-info/SOURCES.txt
neurom.egg-info/dependency_links.txt
neurom.egg-info/entry_points.txt
neurom.egg-info/requires.txt
neurom.egg-info/top_level.txt
neurom/apps/__init__.py
neurom/apps/annotate.py
neurom/apps/cli.py
neurom/apps/morph_stats.py
neurom/apps/tests/test_annotate.py
neurom/apps/tests/test_cli.py
neurom/apps/tests/test_morph_stats.py
neurom/apps/tests/tests.py
neurom/check/__init__.py
neurom/check/morphtree.py
neurom/check/neuron_checks.py
neurom/check/runner.py
neurom/check/structural_checks.py
neurom/check/tests/test_check.py
neurom/check/tests/test_morphtree.py
neurom/check/tests/test_neuron_checks.py
neurom/check/tests/test_runner.py
neurom/check/tests/test_structural_checks.py
neurom/config/morph_check.yaml
neurom/config/morph_stats.yaml
neurom/core/__init__.py
neurom/core/_neuron.py
neurom/core/_soma.py
neurom/core/dataformat.py
neurom/core/point.py
neurom/core/population.py
neurom/core/types.py
neurom/core/tests/test_iter.py
neurom/core/tests/test_neurite.py
neurom/core/tests/test_neuron.py
neurom/core/tests/test_point.py
neurom/core/tests/test_population.py
neurom/core/tests/test_soma.py
neurom/core/tests/test_types.py
neurom/features/__init__.py
neurom/features/bifurcationfunc.py
neurom/features/neuritefunc.py
neurom/features/neuronfunc.py
neurom/features/sectionfunc.py
neurom/features/tests/__init__.py
neurom/features/tests/test_bifurcationfunc.py
neurom/features/tests/test_get_features.py
neurom/features/tests/test_neuritefunc.py
neurom/features/tests/test_neuronfunc.py
neurom/features/tests/test_sectionfunc.py
neurom/features/tests/utils.py
neurom/fst/__init__.py
neurom/fst/_bifurcationfunc.py
neurom/fst/_neuritefunc.py
neurom/fst/_neuronfunc.py
neurom/fst/sectionfunc.py
neurom/fst/tests/test_bifurcationfunc.py
neurom/fst/tests/test_feature_compat.py
neurom/fst/tests/test_get_features.py
neurom/fst/tests/test_neuritefunc.py
neurom/fst/tests/test_neuronfunc.py
neurom/fst/tests/test_sectionfunc.py
neurom/geom/__init__.py
neurom/geom/transform.py
neurom/geom/tests/test_geom.py
neurom/geom/tests/test_transform.py
neurom/io/__init__.py
neurom/io/utils.py
neurom/io/tests/__init__.py
neurom/io/tests/test_neurolucida.py
neurom/io/tests/test_swc_reader.py
neurom/io/tests/test_utils.py
neurom/tests/__init__.py
neurom/tests/test_import.py
neurom/tests/test_morphmath.py
neurom/tests/test_stats.py
neurom/tests/test_utils.py
neurom/tests/test_viewer.py
neurom/view/__init__.py
neurom/view/common.py
neurom/view/dendrogram.py
neurom/view/plotly.py
neurom/view/view.py
neurom/view/tests/__init__.py
neurom/view/tests/test_common.py
neurom/view/tests/test_dendrogram.py
neurom/view/tests/test_view.py
neurom/view/tests/utils.py
test_data/README.md
test_data/extracted-stats.csv
test_data/unsupported_extension.fake
test_data/dataset/point_neuron_feature_values.json
test_data/h5/v1/Neuron.h5
test_data/h5/v1/Neuron_2_branch.h5
test_data/h5/v1/big_neuron.h5
test_data/h5/v1/bio_neuron-000.h5
test_data/h5/v1/bio_neuron-001.h5
test_data/h5/v1/deep_neuron.h5
test_data/h5/v1/ordering/sample.h5
test_data/h5/v1/ordering/sample_mixed_tree_sections.h5
test_data/h5/v2/Neuron.h5
test_data/h5/v2/Neuron_2_branch.h5
test_data/h5/v2/Neuron_unraveled.h5
test_data/neurolucida/axon-sprout-from-dendrite.asc
test_data/neurolucida/bio_neuron-000.asc
test_data/neurolucida/bio_neuron-001.asc
test_data/neurolucida/broken-spine.asc
test_data/neurolucida/multifurcation.asc
test_data/neurolucida/not_too_complex.asc
test_data/neurolucida/sample.asc
test_data/neurolucida/spine.asc
test_data/neuromorpho/README.md
test_data/swc/Neuron.swc
test_data/swc/Neuron_3_random_walker_branches.swc
test_data/swc/Neuron_disconnected_components.swc
test_data/swc/Neuron_missing_ids.swc
test_data/swc/Neuron_missing_parents.swc
test_data/swc/Neuron_no_missing_ids_no_zero_segs.swc
test_data/swc/Neuron_small_radius.swc
test_data/swc/Neuron_zero_length_sections.swc
test_data/swc/Neuron_zero_length_segments.swc
test_data/swc/Neuron_zero_radius.swc
test_data/swc/Single_apical.swc
test_data/swc/Single_apical_no_soma.swc
test_data/swc/Single_axon.swc
test_data/swc/Single_basal.swc
test_data/swc/Soma_origin.swc
test_data/swc/Soma_translated_1.swc
test_data/swc/Soma_translated_2.swc
test_data/swc/custom_type.swc
test_data/swc/dangling_axon.swc
test_data/swc/dangling_dendrite.swc
test_data/swc/empty_segments.swc
test_data/swc/fat_end.swc
test_data/swc/multiple_somata.swc
test_data/swc/narrow_start.swc
test_data/swc/non_increasing_trunk_off_1_16pt.swc
test_data/swc/point_soma.swc
test_data/swc/point_soma_single_neurite.swc
test_data/swc/point_soma_single_neurite2.swc
test_data/swc/random_trunk_off_0_16pt.swc
test_data/swc/repeated_id.swc
test_data/swc/root_node_jump.swc
test_data/swc/sequential_trunk_off_0_16pt.swc
test_data/swc/sequential_trunk_off_1_16pt.swc
test_data/swc/sequential_trunk_off_42_16pt.swc
test_data/swc/simple-different-section-types.swc
test_data/swc/simple-different-soma.swc
test_data/swc/simple.swc
test_data/swc/simple_reversed.swc
test_data/swc/simple_trunk.swc
test_data/swc/soma_with_neurite_parent.swc
test_data/swc/soma_zero_radius.swc
test_data/swc/split_soma_two_neurites.swc
test_data/swc/strahler.swc
test_data/swc/test_morph.swc
test_data/swc/undefined_type.swc
test_data/swc/z_jump.swc
test_data/swc/ordering/reversed_NRN_neurite_order.swc
test_data/swc/ordering/sample.swc
test_data/swc/ordering/sample_disordered.swc
test_data/swc/ordering/sample_mixed_tree_sections.swc
test_data/swc/soma/bifurcating_soma.swc
test_data/swc/soma/three_pt_soma.swc
test_data/valid_set/Neuron.swc
test_data/valid_set/Neuron_2_branch_h5v1.h5
test_data/valid_set/Neuron_2_branch_h5v2.h5
test_data/valid_set/Neuron_h5v1.h5
test_data/valid_set/Neuron_h5v2.h5
test_data/valid_set/Neuron_slice.h5
test_data/valid_set/README.md
tutorial/getting_started.ipynb
tutorial/plotly.ipynb