Metadata-Version: 1.2
Name: neurocurator
Version: 0.4.4
Summary: Application to perform curation of neuroscientific literature.
Home-page: https://github.com/BlueBrain/neurocurator
Author: Christian O'Reilly, Pierre-Alexandre Fonta
Author-email: christian.oreilly@epfl.ch, pierre-alexandre.fonta@epfl.ch
License: GPLv3
Description: `Getting Started <#getting-started>`__ \| `Upgrade <#upgrade>`__ \|
        `Releases <#releases>`__ \| `Roadmap <#roadmap>`__ \|
        `Status <#status>`__
        
        **For the Annotation Viewer or the integration with
        the**\ `OpenMinTeD <https://openminted.eu>`__\ **platform, please refer
        to
        this**\ `branch <https://github.com/BlueBrain/neurocurator/blob/annotation_viewer/ANNOTATION_VIEWER.md>`__\ **.**
        
        NeuroCurator
        ============
        
        Desktop application to perform systematic and collaborative curation of
        neuroscientific literature.
        
        This is a Graphical User Interface (GUI) for the Python module
        `NeuroAnnotation Toolbox (NAT) <https://github.com/BlueBrain/nat>`__.
        
        This framework has been described in details in the following
        open-access paper: https://doi.org/10.3389/fninf.2017.00027.
        
        With NeuroCurator, annotations are: - traceable, - reusable across
        projects, - structured with controlled vocabularies.
        
        --------------
        
        Getting Started
        ---------------
        
        Installation
        ~~~~~~~~~~~~
        
        After having **installed Git and ImageMagick 6**:
        
        .. code:: bash
        
           pip3 install neurocurator
        
        If you would like to simplify the installation with Miniconda:
        
        .. code:: bash
        
           conda create --name nc python=3.7
           conda activate nc
           conda install beautifulsoup4 gitpython lxml numpy pandas scipy
           pip install neurocurator
        
        **Requirements**
        
        -  System side:
        
           -  `Python 3.4+ <https://www.python.org/downloads/>`__
           -  `Qt 5.11+ <https://doc.qt.io/qt-5/gettingstarted.html>`__
           -  `Git 1.7.0+ <https://git-scm.com/downloads>`__
           -  `ImageMagick
              6 <http://docs.wand-py.org/en/latest/guide/install.html>`__
           -  `Miniconda <https://conda.io/miniconda.html>`__ (optional)
        
        -  Python side:
        
           -  `NAT <https://pypi.org/project/nat/>`__
           -  `PyQt5 <https://pypi.org/project/PyQt5/>`__
           -  `NumPy <https://pypi.org/project/numpy/>`__
           -  `pandas <https://pypi.org/project/pandas/>`__
           -  `Wand <https://pypi.org/project/Wand/>`__
        
        Launch
        ~~~~~~
        
        .. code:: bash
        
           neurocurator
        
        If you have used Miniconda:
        
        .. code:: bash
        
           conda activate nc
           neurocurator
        
        Upgrade
        -------
        
        .. code:: bash
        
           pip install --upgrade neurocurator
        
        If you have used Miniconda:
        
        .. code:: bash
        
           conda activate nc
           pip install --upgrade neurocurator
        
        Releases
        --------
        
        Versions and their notable changes are listed in the `releases
        section <https://github.com/BlueBrain/neurocurator/releases/>`__.
        
        Roadmap
        -------
        
        **Ongoing**
        
        1. Make the annotations publishable into a `Blue Brain
           Nexus <https://bluebrain.github.io/nexus/>`__ instance.
        2. Stabilize NeuroCurator and NAT (Software Architecture).
        
        **TODO**
        
        1. Integrate fully the `Annotation
           Viewer <https://github.com/BlueBrain/neurocurator/blob/annotation_viewer/ANNOTATION_VIEWER.md>`__
           into NeuroCurator.
        2. Semi-automate the Knowledge Extraction process.
        
        **Done** (latest first)
        
        -  Remove legacy dependencies in NeuroCurator (Qt 4 and Python 3.4).
        -  Integrate OpenMinTeD annotations into the literature curation
           framework.
        -  Visualize NeuroCurator and OpenMinTeD annotations directly on PDFs.
        -  Make NeuroCurator easily installable, especially by scientists.
        
        Updated on 20.07.18.
        
        Status
        ------
        
        Created during 2016.
        
        Ongoing stabilization and reengineering in the branch
        *refactor-architecture*.
        
        The branch *refactor-architecture* is **not** intended to be used by
        end-users.
        
        New features, bug fixes and improvements are done on the reengineered
        code sections.
        
        When a reengineered code section is stable, it’s merged into the branch
        *master* and a release is published.
        
Keywords: neuroscience annotation curation literature modeling parameters
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering
Classifier: Environment :: X11 Applications :: Qt
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: License :: Free for non-commercial use
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Operating System :: MacOS
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: Microsoft :: Windows
Classifier: Natural Language :: English
Requires-Python: >=3.4
