LICENSE
README.md
pyproject.toml
src/neuro_sam/__init__.py
src/neuro_sam/plugin.py
src/neuro_sam.egg-info/PKG-INFO
src/neuro_sam.egg-info/SOURCES.txt
src/neuro_sam.egg-info/dependency_links.txt
src/neuro_sam.egg-info/entry_points.txt
src/neuro_sam.egg-info/requires.txt
src/neuro_sam.egg-info/top_level.txt
src/neuro_sam/brightest_path_lib/__init__.py
src/neuro_sam/brightest_path_lib/connected_componen.py
src/neuro_sam/brightest_path_lib/algorithm/__init__.py
src/neuro_sam/brightest_path_lib/algorithm/astar.py
src/neuro_sam/brightest_path_lib/algorithm/waypointastar.py
src/neuro_sam/brightest_path_lib/algorithm/waypointastar_speedup.py
src/neuro_sam/brightest_path_lib/cost/__init__.py
src/neuro_sam/brightest_path_lib/cost/cost.py
src/neuro_sam/brightest_path_lib/cost/reciprocal.py
src/neuro_sam/brightest_path_lib/cost/reciprocal_transonic.py
src/neuro_sam/brightest_path_lib/heuristic/__init__.py
src/neuro_sam/brightest_path_lib/heuristic/euclidean.py
src/neuro_sam/brightest_path_lib/heuristic/heuristic.py
src/neuro_sam/brightest_path_lib/image/__init__.py
src/neuro_sam/brightest_path_lib/image/stats.py
src/neuro_sam/brightest_path_lib/input/__init__.py
src/neuro_sam/brightest_path_lib/input/inputs.py
src/neuro_sam/brightest_path_lib/node/__init__.py
src/neuro_sam/brightest_path_lib/node/bidirectional_node.py
src/neuro_sam/brightest_path_lib/node/node.py
src/neuro_sam/brightest_path_lib/visualization/__init__.py
src/neuro_sam/brightest_path_lib/visualization/flythrough.py
src/neuro_sam/brightest_path_lib/visualization/flythrough_all.py
src/neuro_sam/brightest_path_lib/visualization/tube_data.py
src/neuro_sam/brightest_path_lib/visualization/tube_flythrough.py
src/neuro_sam/napari_utils/anisotropic_scaling.py
src/neuro_sam/napari_utils/color_utils.py
src/neuro_sam/napari_utils/contrasting_color_system.py
src/neuro_sam/napari_utils/main_widget.py
src/neuro_sam/napari_utils/path_tracing_module.py
src/neuro_sam/napari_utils/punet_widget.py
src/neuro_sam/napari_utils/segmentation_model.py
src/neuro_sam/napari_utils/segmentation_module.py
src/neuro_sam/napari_utils/visualization_module.py
src/neuro_sam/punet/__init__.py
src/neuro_sam/punet/deepd3_model.py
src/neuro_sam/punet/prob_unet_deepd3.py
src/neuro_sam/punet/prob_unet_with_tversky.py
src/neuro_sam/punet/punet_inference.py
src/neuro_sam/punet/run_inference.py
src/neuro_sam/punet/unet_blocks.py
src/neuro_sam/punet/utils.py
src/sam2/__init__.py
src/sam2/automatic_mask_generator.py
src/sam2/benchmark.py
src/sam2/build_sam.py
src/sam2/sam2.1_hiera_b+.yaml
src/sam2/sam2.1_hiera_l.yaml
src/sam2/sam2.1_hiera_s.yaml
src/sam2/sam2.1_hiera_t.yaml
src/sam2/sam2_hiera_b+.yaml
src/sam2/sam2_hiera_l.yaml
src/sam2/sam2_hiera_s.yaml
src/sam2/sam2_hiera_t.yaml
src/sam2/sam2_image_predictor.py
src/sam2/sam2_video_predictor.py
src/sam2/sam2_video_predictor_legacy.py
src/sam2/configs/train.yaml
src/sam2/configs/sam2/sam2_hiera_b+.yaml
src/sam2/configs/sam2/sam2_hiera_l.yaml
src/sam2/configs/sam2/sam2_hiera_s.yaml
src/sam2/configs/sam2/sam2_hiera_t.yaml
src/sam2/configs/sam2.1/sam2.1_hiera_b+.yaml
src/sam2/configs/sam2.1/sam2.1_hiera_l.yaml
src/sam2/configs/sam2.1/sam2.1_hiera_s.yaml
src/sam2/configs/sam2.1/sam2.1_hiera_t.yaml
src/sam2/configs/sam2.1_training/sam2.1_hiera_b+_MOSE_finetune.yaml
src/sam2/modeling/__init__.py
src/sam2/modeling/memory_attention.py
src/sam2/modeling/memory_encoder.py
src/sam2/modeling/position_encoding.py
src/sam2/modeling/sam2_base.py
src/sam2/modeling/sam2_utils.py
src/sam2/modeling/backbones/__init__.py
src/sam2/modeling/backbones/hieradet.py
src/sam2/modeling/backbones/image_encoder.py
src/sam2/modeling/backbones/utils.py
src/sam2/modeling/sam/__init__.py
src/sam2/modeling/sam/mask_decoder.py
src/sam2/modeling/sam/prompt_encoder.py
src/sam2/modeling/sam/transformer.py
src/sam2/utils/__init__.py
src/sam2/utils/amg.py
src/sam2/utils/misc.py
src/sam2/utils/transforms.py