attrs
colorama
colorlog
matplotlib
matplotlib_venn
seaborn
numpy
scipy
scikit-image
pandas
polars
pyarrow
tifffile
opencv-python>=4.8.0.76
tqdm
requests
gdown
rich
h5py
typing_extensions

[all]
neura-library[atlas]
neura-library[scanner]
neura-library[imaging]
neura-library[imagelib]
neura-library[rastermap]
neura-library[cascade]
neura-library[cellpose]
neura-library[slack]
neura-library[gspread]
neura-library[opt]

[atlas]
brainrender
pynrrd
openpyxl
anytree
plotly

[cascade]
tensorflow

[cellpose]
torch
cellpose
neura-library[segmentation]

[dev]
pre-commit
ruff
neura-library[all]

[doc]
sphinx
nbsphinx
sphinx-toolbox
sphinx-rtd-theme
neura-library[all]

[gspread]
gspread

[imagelib]
pdf2image
imageio

[imaging]
scanimage-tiff-reader
sbxreader
ruamel.yaml
numba
bokeh
napari

[opt]
psutil

[rastermap]
rastermap

[scanner]
xmltodict
aicspylibczi

[segmentation]
pyqt6
pyqtgraph
csbdeep
roifile
napari

[slack]
dotenv
slackclient

[stardist]
stardist
neura-library[segmentation]

[stardist:extra == "stardist"]
numpy<2.0
