Search.setIndex({docnames:["cropping_data","dark_field_correction","export_data","index","installation","loading","normalization","notebook","retrieve_normalized_data","tutorial_normalization_with_fewer_ob_than_sample","tutorial_using_array_input","tutorial_using_folder_input"],envversion:53,filenames:["cropping_data.rst","dark_field_correction.rst","export_data.rst","index.rst","installation.rst","loading.rst","normalization.rst","notebook.rst","retrieve_normalized_data.rst","tutorial_normalization_with_fewer_ob_than_sample.ipynb","tutorial_using_array_input.ipynb","tutorial_using_folder_input.ipynb"],objects:{},objnames:{},objtypes:{},terms:{"case":[1,5],"default":[2,5,6],"export":3,"import":[4,5,9,10,11],"true":[5,6,7,9,10,11],But:[5,6],For:5,The:[0,5,8],Then:4,Use:5,_data1:5,_data2:5,_data3:5,_df1:5,_df2:5,_df_data:10,_file:10,_ob1:5,_ob2:5,_ob3:5,_ob_data:10,_sample_data:10,abov:5,abspath:10,access:5,adding:5,after:0,again:5,algorithm:[0,5],all:[1,5],allow:5,also:5,ani:[2,5,6],append:[5,9,10,11],arrai:[3,6],asarrai:10,assert:[9,11],auto:3,auto_gamma_filt:5,automat:5,averag:[5,6],bar:7,been:[5,6],being:2,bright:5,calcul:5,can:[5,6,8],cannot:11,chang:5,conda:4,consid:5,content:3,coordin:0,copi:5,corner:0,correct:[3,5],count:5,creat:5,crop:[3,9,10,11],dark:3,data:[3,5,6,9,10,11],data_typ:[2,5,9,10,11],defin:[0,5,6],df001:5,df002:5,df_correct:[1,5,10,11],df_data:10,did:1,differ:5,directli:5,dirnam:[9,10,11],displai:[7,11],divid:6,doing:5,don:6,done:0,dure:7,each:6,easili:5,either:[2,8],entir:5,environ:4,equal:5,equival:6,exampl:5,exercis:5,exist:[9,11],fals:5,featur:5,field:3,file:[2,3,7,9],file_nam:5,file_typ:2,filter:3,first:[0,4,5],fit:[2,5],flag:5,folder:[2,3,7,9,11],follow:[5,6],forc:[3,5],force_mean_ob:6,format:5,from:[4,5,9,10,11],full:5,gama:5,gamma:3,gamma_filt:5,gamma_filter_threshold:5,get:6,get_df_data:8,get_normalized_data:8,get_ob_data:8,get_sample_data:8,getcwd:[9,10,11],give:5,glob:10,greater:5,gridspec:[9,10,11],has:6,have:[0,5,7],height:[0,9,10,11],how:6,imag:[1,5,10],image001:5,image002:5,image002_file_nam:5,image003:5,image003_file_nam:5,index:[3,6],individu:3,init:5,input:5,instal:3,int16:5,intens:5,interest:0,join:10,leav:1,left:0,let:[0,5,6],librari:[4,5],list:3,list_df:[5,10],list_fil:5,list_ob:5,list_open_beam:10,list_sampl:10,load:[1,3,7,9,10,11],make:5,manual:3,marg:5,match:6,matplotlib:[9,10,11],maximum:5,mean:[3,5],memori:5,method:[0,5],modul:3,more:5,multipli:5,must:[0,5],my_crop_roi:0,my_norm_roi:6,my_output_fold:2,name:3,need:[4,5],neighbor:5,neunorm:[4,5,8,9,10,11],neutronimag:4,norm:8,norm_crop:[9,10,11],norm_roi:[6,9,10,11],normal:[0,2,4,5,7,9,10,11],normalized_data:[8,9,10,11],notebook:[9,10,11],now:5,number:6,numpi:[9,10,11],o_gret:6,o_norm:[0,1,2,5,6,7,8,9,10,11],ob001:5,ob002:5,ob003:5,ob1:[5,9],ob2:9,ob2_file_nam:5,ob_data:10,ob_normalized_arrai:6,off:5,one:[5,7],onli:[0,5],open:[5,10],oper:5,option:[0,3,5,7],order:5,oscil:5,otherwis:5,our:5,ourselv:5,out:[9,10,11],output_fold:2,overwrit:5,own:5,page:3,patch:[9,10,11],path:[9,10,11],path_df:[10,11],path_im:[9,10,11],path_ob:[9,10,11],pil:[5,10],pip:4,pixel:5,place:5,plt:[9,10,11],point:5,possibl:[2,5,6],prefer:2,pretend:[0,5],probabl:1,process:7,program:5,progress:7,provid:[5,6],pyplot:[9,10,11],python:4,raw:5,rebin:5,recov:8,region:[0,6],replac:5,rest:5,retriev:[3,5,6],risk:5,roi:[0,3,4,9,10,11],roi_to_keep:[9,10,11],root_fold:[9,10,11],run:[0,5,6,7],sake:5,same:[5,6],sampl:[0,1,2,5,6,7,8,9,10,11],sample_data:10,sample_fold:[5,7],sample_normalized_arrai:6,search:3,set:[1,6],shape:[9,10,11],show:7,simpli:6,specifi:[5,6],still:5,surround:5,sys:[9,10,11],take:5,than:5,them:5,thi:[0,1,5,6,8],thing:6,those:[5,6],threshold:5,tif:[2,5,9,10],time:[5,7],top:0,trigger:5,turn:5,twice:5,type:[5,11],untouch:1,use:[0,6],used:5,user:[2,5,7],using:[3,4,5,8],valu:5,veri:5,via:3,wai:[5,6,8],want:[1,5,6],warn:5,what:5,when:[5,7],which:5,width:[0,9,10,11],without:3,won:5,work:2,you:[0,1,2,4,5,6,7,8],your:[1,4,5,6],yourself:5},titles:["Cropping Data","Dark Field Correction","Export Data","Welcome to Normalization\u2019s documentation!","Installation","Loading","Normalization","Using library from a Notebook","Retrieve Normalized Data","&lt;no title&gt;","&lt;no title&gt;","&lt;no title&gt;"],titleterms:{"export":2,Using:7,arrai:5,auto:5,correct:1,crop:0,dark:1,data:[0,2,8],document:3,doe:5,field:1,file:5,filter:5,folder:5,forc:6,from:7,gamma:5,how:5,indic:3,individu:5,instal:4,librari:7,list:5,load:5,manual:5,mean:6,name:5,normal:[3,6,8],notebook:7,option:6,retriev:8,roi:6,tabl:3,using:6,via:5,welcom:3,without:6,work:5}})