LICENSE.txt
MANIFEST.in
Makefile
README.md
pyproject.toml
setup.py
code/common.cpp
code/common.h
code/converter.cpp
code/flagHandler.cpp
code/flagHandler.h
code/msaReader.cpp
code/msaReader.h
code/msaWriter.cpp
code/msaWriter.h
code/multimerHandler.cpp
code/multimerHandler.h
code/neff.cpp
neffy/__init__.py
neffy/neffy.py
neffy.egg-info/PKG-INFO
neffy.egg-info/SOURCES.txt
neffy.egg-info/dependency_links.txt
neffy.egg-info/entry_points.txt
neffy.egg-info/top_level.txt
neffy/../code/common.cpp
neffy/../code/common.h
neffy/../code/converter.cpp
neffy/../code/flagHandler.cpp
neffy/../code/flagHandler.h
neffy/../code/msaReader.cpp
neffy/../code/msaReader.h
neffy/../code/msaWriter.cpp
neffy/../code/msaWriter.h
neffy/../code/multimerHandler.cpp
neffy/../code/multimerHandler.h
neffy/../code/neff.cpp