LICENSE
README.md
pyproject.toml
setup.py
ncOrtho/__init__.py
ncOrtho/blastparser.py
ncOrtho/cmsearch.py
ncOrtho/genparser.py
ncOrtho/ncortho.py
ncOrtho/utils.py
ncOrtho.egg-info/PKG-INFO
ncOrtho.egg-info/SOURCES.txt
ncOrtho.egg-info/dependency_links.txt
ncOrtho.egg-info/entry_points.txt
ncOrtho.egg-info/requires.txt
ncOrtho.egg-info/top_level.txt
ncOrtho/analysis/__init__.py
ncOrtho/analysis/concat_alignments_dmp.pl
ncOrtho/analysis/degapper.pl
ncOrtho/analysis/ncAnalyze.py
ncOrtho/coreset/__init__.py
ncOrtho/coreset/core_reblast.py
ncOrtho/coreset/coreset.py
ncOrtho/coreset/coreset_utils.py
ncOrtho/coreset/createcm.py
ncOrtho/coreset/example_parameters.yaml