Metadata-Version: 2.1
Name: ncbi_db
Version: 0.0.3
Summary: Collection of scripts that wrap the Entrez Bio python module, to query and download portions of NCBI databases
Home-page: https://github.com/pypa/ncbi_db
Author: Marco Mariotti
Author-email: marco.mariotti@ub.edu
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown

# ncbi_db
Collection of scripts that wrap the Entrez Bio python module.
Mainly to build your own copy of selected entries form the ncbi databases

Right now these tools are available: 

- ncbi_lib.py          library of functions; not to be executed
- ncbi_db_info.py      simply to display the available fields in any ncbi DB, browsable through the BioPython tools
- ncbi_assembly.py     to browse the available assemblies/genomes for any species or lineage, including their annotation/proteome, and possibly download them in a local folder
- parse_genbank.py     parse a gbf file to extract selected entries. Requires GBParsy module
- ncbi_pubmed.py       wrapper to ncbi pubmed search engine; it can format results for bibliography
