#    This script is part of navis (http://www.github.com/navis-org/navis).
#    Copyright (C) 2018 Philipp Schlegel
#
#    This program is free software: you can redistribute it and/or modify
#    it under the terms of the GNU General Public License as published by
#    the Free Software Foundation, either version 3 of the License, or
#    (at your option) any later version.
#
#    This program is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#    GNU General Public License for more details.

from .mmetrics import (strahler_index, bending_flow, flow_centrality, sholl_analysis,
                       segregation_index, arbor_segregation_index, tortuosity,
                       betweeness_centrality)
from .manipulation import (prune_by_strahler, stitch_skeletons,
                           split_axon_dendrite, average_skeletons,
                           despike_skeleton, guess_radius, smooth_skeleton,
                           heal_skeleton, break_fragments,
                           prune_twigs, prune_at_depth, cell_body_fiber,
                           drop_fluff, smooth_voxels, combine_neurons)
from .analyze import find_soma
from .subset import subset_neuron
from .persistence import (persistence_points, persistence_vectors,
                          persistence_distances)

__all__ = ['strahler_index', 'bending_flow', 'flow_centrality',
           'segregation_index', 'arbor_segregation_index', 'tortuosity',
           'prune_by_strahler', 'stitch_skeletons', 'split_axon_dendrite',
           'average_skeletons', 'despike_skeleton', 'guess_radius', 'smooth_skeleton',
           'heal_skeleton', 'break_fragments', 'prune_twigs',
           'find_soma', 'prune_at_depth', 'cell_body_fiber', 'drop_fluff',
           'subset_neuron', 'smooth_voxels', 'sholl_analysis',
           'persistence_points', 'betweeness_centrality',
           'persistence_vectors', 'persistence_distances', 'combine_neurons']
