#    This script is part of navis (http://www.github.com/navis-org/navis).
#    Copyright (C) 2018 Philipp Schlegel
#
#    This program is free software: you can redistribute it and/or modify
#    it under the terms of the GNU General Public License as published by
#    the Free Software Foundation, either version 3 of the License, or
#    (at your option) any later version.
#
#    This program is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#    GNU General Public License for more details.

from .converters import (
    network2nx,
    network2igraph,
    neuron2igraph,
    nx2neuron,
    edges2neuron,
    neuron2nx,
    neuron2KDTree,
    neuron2tangents,
    simplify_graph,
)
from .graph_utils import (
    classify_nodes,
    cut_skeleton,
    longest_neurite,
    split_into_fragments,
    reroot_skeleton,
    distal_to,
    dist_between,
    find_main_branchpoint,
    generate_list_of_childs,
    geodesic_matrix,
    node_label_sorting,
    _break_segments,
    _generate_segments,
    segment_length,
    _connected_components,
    rewire_skeleton,
    connected_subgraph,
    insert_nodes,
    remove_nodes,
    dist_to_root,
    skeleton_adjacency_matrix,
)
from .clinic import health_check


__all__ = [
    "cut_skeleton",
    "longest_neurite",
    "split_into_fragments",
    "reroot_skeleton",
    "distal_to",
    "dist_between",
    "segment_length",
    "find_main_branchpoint",
    "geodesic_matrix",
    "rewire_skeleton",
    "insert_nodes",
    "remove_nodes",
    "health_check",
    "graph_utils",
    "network2nx",
    "network2igraph",
    "neuron2igraph",
    "nx2neuron",
    "edges2neuron",
    "neuron2nx",
    "neuron2KDTree",
    "neuron2tangents",
    "dist_to_root",
]
