#    This script is part of navis (http://www.github.com/navis-org/navis).
#    Copyright (C) 2018 Philipp Schlegel
#
#    This program is free software: you can redistribute it and/or modify
#    it under the terms of the GNU General Public License as published by
#    the Free Software Foundation, either version 3 of the License, or
#    (at your option) any later version.
#
#    This program is distributed in the hope that it will be useful,
#    but WITHOUT ANY WARRANTY; without even the implied warranty of
#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#    GNU General Public License for more details.

from .mmetrics import (strahler_index, bending_flow,
                       flow_centrality, synapse_flow_centrality, sholl_analysis,
                       segregation_index, arbor_segregation_index, tortuosity,
                       betweeness_centrality, segment_analysis, cable_length)
from .manipulation import (prune_by_strahler, stitch_skeletons,
                           split_axon_dendrite, average_skeletons,
                           despike_skeleton, guess_radius, smooth_skeleton,
                           heal_skeleton, break_fragments,
                           prune_twigs, prune_at_depth, cell_body_fiber,
                           drop_fluff, combine_neurons)
from .analyze import find_soma
from .subset import subset_neuron
from .persistence import (persistence_points, persistence_vectors,
                          persistence_distances)
from .fq import form_factor
from .ivscc import ivscc_features
from .images import smooth_voxels, thin_voxels


__all__ = ['strahler_index', 'bending_flow', 'flow_centrality', 'synapse_flow_centrality',
           'segregation_index', 'arbor_segregation_index', 'tortuosity',
           'prune_by_strahler', 'stitch_skeletons', 'split_axon_dendrite',
           'average_skeletons', 'despike_skeleton', 'guess_radius', 'smooth_skeleton',
           'heal_skeleton', 'break_fragments', 'prune_twigs',
           'find_soma', 'prune_at_depth', 'cell_body_fiber', 'drop_fluff',
           'subset_neuron', 'smooth_voxels', 'sholl_analysis',
           'persistence_points', 'betweeness_centrality',
           'persistence_vectors', 'persistence_distances', 'combine_neurons',
           'segment_analysis', 'form_factor', 'ivscc_features', "thin_voxels"]
