Metadata-Version: 2.1
Name: navis
Version: 0.5.2
Summary: Neuron Analysis and Visualization library
Home-page: http://navis.readthedocs.io
Author: Philipp Schlegel
Author-email: pms70@cam.ac.uk
License: GNU GPL V3
Keywords: Neuron Analysis Visualization Anatomy Connectivity Transform
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Requires-Python: >=3.6
Requires-Dist: h5py (>=3.1)
Requires-Dist: matplotlib (>=3.2)
Requires-Dist: morphops (>=0.1.11)
Requires-Dist: ncollpyde (>=0.11)
Requires-Dist: networkx (>=2.4)
Requires-Dist: numpy (>=1.16)
Requires-Dist: pandas (>=1.0)
Requires-Dist: pint (>=0.10)
Requires-Dist: plotly (>=4.9)
Requires-Dist: pynrrd (>=0.4.2)
Requires-Dist: pypng (>=0.0.18)
Requires-Dist: PyQt5 (>=5.15)
Requires-Dist: requests (>=2.20)
Requires-Dist: Shapely (>=1.6.0)
Requires-Dist: seaborn (>=0.10)
Requires-Dist: setuptools (>=50.6)
Requires-Dist: scipy (>=1.5)
Requires-Dist: six (>=1.11)
Requires-Dist: tqdm (>=4.45)
Requires-Dist: typing-extensions (>=3.7.4)
Requires-Dist: trimesh (>=3.8)
Requires-Dist: vispy (>=0.6.4)
Requires-Dist: fuzzywuzzy (>=0.18)
Provides-Extra: extras


NAVis is a Python 3 library for analysis and visualization of neuron
morphology.

Features include:

* work with various neuron types: skeletons, meshes, dotprops
* 2D (matplotlib) and 3D (vispy or plotly) plotting
* virtual neuron surgery: cutting, stitching, pruning, rerooting, etc
* analyze morphology (e.g. NBLAST) and connectivity
* transform neurons between template brains
* load neurons directly from `neuPrint <https://neuprint.janelia.org>`_ and `neuromorpho.org <http://neuromorpho.org>`_
* interface with Blender 3D
* interface with R neuron libraries (e.g. nat, nat.nblast and elmr)
* import-export from/to SWC
* designed to be extensible - see for example `pymaid <https://pymaid.readthedocs.io/en/latest/>`_

Check out the `Documentation <http://navis.readthedocs.io/>`_.


