Metadata-Version: 2.1
Name: navis
Version: 0.2.0
Summary: Neuron Analysis and Visualization Library
Home-page: http://navis.readthedocs.io
Author: Philipp Schlegel
Author-email: pms70@cam.ac.uk
License: GNU GPL V3
Keywords: Neuron Analysis Visualization Anatomy Connectivity
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Python: >=3.6
Requires-Dist: matplotlib (~=3.1)
Requires-Dist: numpy (~=1.16)
Requires-Dist: networkx (~=2.3)
Requires-Dist: pandas (~=1.0)
Requires-Dist: pint (~=0.10)
Requires-Dist: plotly (~=4.3)
Requires-Dist: pypng (~=0.0.18)
Requires-Dist: PyQt5 (~=5.13)
Requires-Dist: requests (~=2.20)
Requires-Dist: requests-futures (~=1.0.0)
Requires-Dist: Shapely (~=1.6.0)
Requires-Dist: seaborn (~=0.10)
Requires-Dist: setuptools (~=45.1)
Requires-Dist: scipy (~=1.3.0)
Requires-Dist: six (~=1.11)
Requires-Dist: tqdm (~=4.45)
Requires-Dist: vispy (~=0.6.0)
Requires-Dist: typing-extensions (~=3.7.4)
Requires-Dist: trimesh (~=3.4.4)
Requires-Dist: ncollpyde (~=0.9.0)
Provides-Extra: extras


NAVis is a Python 3 library for Neuron Analysis and
Visualization with focus on hierarchical tree-like neuron data.

Features:

  - interactive 2D (matplotlib) and 3D (vispy/plotly) plotting of neurons
  - virtual neuron surgery: cutting, pruning, rerooting
  - clustering methods (e.g. by connectivity or synapse placement)
  - R bindings (e.g. for libraries nat, rcatmaid, elmr)
  - interfaces with neurint, Blender 3D and Cytoscape

Check out the `Documentation <http://navis.readthedocs.io/>`_.


