Metadata-Version: 2.1
Name: navis
Version: 0.1.2
Summary: Neuron Analysis and Visualization Library
Home-page: https://github.com/schlegelp/navis
Author: Philipp Schlegel
Author-email: pms70@cam.ac.uk
License: GNU GPL V3
Keywords: Neuron Analysis Visualization Anatomy Connectivity
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Python: >=3.6
Requires-Dist: decorator (>=4.1.0)
Requires-Dist: imageio (==2.4.1)
Requires-Dist: matplotlib (==3.0.1)
Requires-Dist: numpy (==1.15.3)
Requires-Dist: networkx (==2.1)
Requires-Dist: pandas (==0.23.4)
Requires-Dist: plotly (==3.4.0)
Requires-Dist: pypng (==0.0.18)
Requires-Dist: pyqt5 (==5.11.3)
Requires-Dist: requests (==2.20.0)
Requires-Dist: requests-futures (==0.9.8)
Requires-Dist: Shapely (==1.6.4.post2)
Requires-Dist: seaborn (==0.9.0)
Requires-Dist: setuptools (==40.5.0)
Requires-Dist: scipy (==1.1.0)
Requires-Dist: six (==1.11.0)
Requires-Dist: tqdm (==4.28.1)
Requires-Dist: vispy (==0.5.3)
Requires-Dist: typing-extensions
Provides-Extra: extras
Requires-Dist: pyoctree (==0.2.10) ; extra == 'extras'
Requires-Dist: trimesh (==2.35.2) ; extra == 'extras'


NAVis is a Python 3 library for Neuron Analysis and
Visualization with focus on hierarchical tree-like neuron data.

Features:

  - interactive 2D (matplotlib) and 3D (vispy/plotly) plotting of neurons
  - virtual neuron surgery: cutting, pruning, rerooting
  - clustering methods (e.g. by connectivity or synapse placement)
  - R bindings (e.g. for libraries nat, rcatmaid, elmr)
  - interfaces with Blender 3D and Cytoscape

Check out the `Documentation <http://navis.readthedocs.io/>`_.


