LICENSE.md
MANIFEST.in
README.md
pyproject.toml
src/__init__.py
src/navigate/VERSION
src/navigate/VERSION
src/navigate/__init__.py
src/navigate/_commit.py
src/navigate/main.py
src/navigate/config/__init__.py
src/navigate/config/config.py
src/navigate/config/configuration.yaml
src/navigate/config/experiment.yml
src/navigate/config/rest_api_config.yml
src/navigate/config/synthetic_configuration.yaml
src/navigate/config/waveform_constants.yml
src/navigate/config/waveform_templates.yml
src/navigate/controller/__init__.py
src/navigate/controller/configuration_controller.py
src/navigate/controller/controller.py
src/navigate/controller/thread_pool.py
src/navigate/controller/sub_controllers/__init__.py
src/navigate/controller/sub_controllers/acquire_bar_controller.py
src/navigate/controller/sub_controllers/adaptiveoptics_popup_controller.py
src/navigate/controller/sub_controllers/autofocus_popup_controller.py
src/navigate/controller/sub_controllers/camera_map_setting_popup_controller.py
src/navigate/controller/sub_controllers/camera_setting_controller.py
src/navigate/controller/sub_controllers/camera_view_controller.py
src/navigate/controller/sub_controllers/channel_setting_controller.py
src/navigate/controller/sub_controllers/channels_tab_controller.py
src/navigate/controller/sub_controllers/feature_advanced_setting_controller.py
src/navigate/controller/sub_controllers/features_popup_controller.py
src/navigate/controller/sub_controllers/gui_controller.py
src/navigate/controller/sub_controllers/ilastik_popup_controller.py
src/navigate/controller/sub_controllers/keystroke_controller.py
src/navigate/controller/sub_controllers/menu_controller.py
src/navigate/controller/sub_controllers/microscope_popup_controller.py
src/navigate/controller/sub_controllers/multi_position_controller.py
src/navigate/controller/sub_controllers/plugins_controller.py
src/navigate/controller/sub_controllers/stage_controller.py
src/navigate/controller/sub_controllers/tiling_wizard_controller.py
src/navigate/controller/sub_controllers/tiling_wizard_controller2.py
src/navigate/controller/sub_controllers/waveform_popup_controller.py
src/navigate/controller/sub_controllers/waveform_tab_controller.py
src/navigate/log_files/__init__.py
src/navigate/log_files/filters.py
src/navigate/log_files/log_functions.py
src/navigate/log_files/logging.yml
src/navigate/log_files/model_logging.yml
src/navigate/model/__init__.py
src/navigate/model/device_startup_functions.py
src/navigate/model/microscope.py
src/navigate/model/model.py
src/navigate/model/plugins_model.py
src/navigate/model/waveforms.py
src/navigate/model/analysis/__init__.py
src/navigate/model/analysis/boundary_detect.py
src/navigate/model/analysis/camera.py
src/navigate/model/analysis/image_contrast.py
src/navigate/model/concurrency/__init__.py
src/navigate/model/concurrency/concurrency_tools.py
src/navigate/model/data_sources/__init__.py
src/navigate/model/data_sources/bdv_data_source.py
src/navigate/model/data_sources/data_source.py
src/navigate/model/data_sources/tiff_data_source.py
src/navigate/model/devices/__init__.py
src/navigate/model/devices/objectives.py
src/navigate/model/devices/APIs/__init__.py
src/navigate/model/devices/APIs/asi/__init__.py
src/navigate/model/devices/APIs/asi/asi_tiger_controller.py
src/navigate/model/devices/APIs/coherent/ObisLaser.py
src/navigate/model/devices/APIs/coherent/__init__.py
src/navigate/model/devices/APIs/dynamixel/__init__.py
src/navigate/model/devices/APIs/dynamixel/dynamixel_functions.py
src/navigate/model/devices/APIs/hamamatsu/HamamatsuAPI.py
src/navigate/model/devices/APIs/hamamatsu/__init__.py
src/navigate/model/devices/APIs/imagineoptics/__init__.py
src/navigate/model/devices/APIs/imagineoptics/enums.py
src/navigate/model/devices/APIs/imagineoptics/imop.py
src/navigate/model/devices/APIs/mcl/__init__.py
src/navigate/model/devices/APIs/mcl/madlib.py
src/navigate/model/devices/APIs/omicron/LuxxLaser.py
src/navigate/model/devices/APIs/omicron/__init__.py
src/navigate/model/devices/APIs/photometrics/__init__.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/setup.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/src/constants_generator.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/src/pyvcam/__init__.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/src/pyvcam/camera.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/src/pyvcam/constants.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/camera_settings.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/change_settings_test.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/check_frame_status.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/live_mode.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/meta_data.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/multi_camera.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/multi_rois.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/newest_frame.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/seq_mode.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/single_image_polling.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/single_image_polling_show.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/stream_to_disk.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/sw_trigger.py
src/navigate/model/devices/APIs/photometrics/PyVCAM-master/tests/test_camera.py
src/navigate/model/devices/APIs/sutter/MP285.py
src/navigate/model/devices/APIs/sutter/__init__.py
src/navigate/model/devices/APIs/thorlabs/__init__.py
src/navigate/model/devices/APIs/thorlabs/kcube_inertial.py
src/navigate/model/devices/camera/__init__.py
src/navigate/model/devices/camera/camera_base.py
src/navigate/model/devices/camera/camera_hamamatsu.py
src/navigate/model/devices/camera/camera_photometrics.py
src/navigate/model/devices/camera/camera_synthetic.py
src/navigate/model/devices/daq/__init__.py
src/navigate/model/devices/daq/daq_base.py
src/navigate/model/devices/daq/daq_ni.py
src/navigate/model/devices/daq/daq_synthetic.py
src/navigate/model/devices/filter_wheel/__init__.py
src/navigate/model/devices/filter_wheel/filter_wheel_asi.py
src/navigate/model/devices/filter_wheel/filter_wheel_base.py
src/navigate/model/devices/filter_wheel/filter_wheel_sutter.py
src/navigate/model/devices/filter_wheel/filter_wheel_synthetic.py
src/navigate/model/devices/galvo/__init__.py
src/navigate/model/devices/galvo/galvo_base.py
src/navigate/model/devices/galvo/galvo_ni.py
src/navigate/model/devices/galvo/galvo_synthetic.py
src/navigate/model/devices/lasers/__init__.py
src/navigate/model/devices/lasers/laser_base.py
src/navigate/model/devices/lasers/laser_ni.py
src/navigate/model/devices/lasers/laser_synthetic.py
src/navigate/model/devices/mirrors/__init__.py
src/navigate/model/devices/mirrors/mirror_base.py
src/navigate/model/devices/mirrors/mirror_imop.py
src/navigate/model/devices/mirrors/mirror_synthetic.py
src/navigate/model/devices/remote_focus/__init__.py
src/navigate/model/devices/remote_focus/remote_focus_base.py
src/navigate/model/devices/remote_focus/remote_focus_equipment_solutions.py
src/navigate/model/devices/remote_focus/remote_focus_ni.py
src/navigate/model/devices/remote_focus/remote_focus_synthetic.py
src/navigate/model/devices/shutter/__init__.py
src/navigate/model/devices/shutter/laser_shutter_base.py
src/navigate/model/devices/shutter/laser_shutter_synthetic.py
src/navigate/model/devices/shutter/laser_shutter_ttl.py
src/navigate/model/devices/stages/__init__.py
src/navigate/model/devices/stages/stage_asi.py
src/navigate/model/devices/stages/stage_base.py
src/navigate/model/devices/stages/stage_galvo.py
src/navigate/model/devices/stages/stage_mcl.py
src/navigate/model/devices/stages/stage_pi.py
src/navigate/model/devices/stages/stage_sutter.py
src/navigate/model/devices/stages/stage_synthetic.py
src/navigate/model/devices/stages/stage_tl_kcube_inertial.py
src/navigate/model/devices/zoom/__init__.py
src/navigate/model/devices/zoom/zoom_base.py
src/navigate/model/devices/zoom/zoom_dynamixel.py
src/navigate/model/devices/zoom/zoom_synthetic.py
src/navigate/model/features/__init__.py
src/navigate/model/features/adaptive_optics.py
src/navigate/model/features/auto_tile_scan.py
src/navigate/model/features/autofocus.py
src/navigate/model/features/common_features.py
src/navigate/model/features/cva_conpro.py
src/navigate/model/features/feature_container.py
src/navigate/model/features/feature_related_functions.py
src/navigate/model/features/image_writer.py
src/navigate/model/features/remove_empty_tiles.py
src/navigate/model/features/restful_features.py
src/navigate/model/features/volume_search.py
src/navigate/model/metadata_sources/__init__.py
src/navigate/model/metadata_sources/bdv_metadata.py
src/navigate/model/metadata_sources/metadata.py
src/navigate/model/metadata_sources/ome_tiff_metadata.py
src/navigate/plugins/__init__.py
src/navigate/tools/__init__.py
src/navigate/tools/common_dict_tools.py
src/navigate/tools/common_functions.py
src/navigate/tools/decorators.py
src/navigate/tools/file_functions.py
src/navigate/tools/image.py
src/navigate/tools/linear_algebra.py
src/navigate/tools/main_functions.py
src/navigate/tools/multipos_table_tools.py
src/navigate/tools/sdf.py
src/navigate/tools/waveform_template_funcs.py
src/navigate/tools/xml_tools.py
src/navigate/view/__init__.py
src/navigate/view/main_application_window.py
src/navigate/view/splash_screen.py
src/navigate/view/custom_widgets/ArrowLabel.py
src/navigate/view/custom_widgets/DockableNotebook.py
src/navigate/view/custom_widgets/LabelInputWidgetFactory.py
src/navigate/view/custom_widgets/__init__.py
src/navigate/view/custom_widgets/hover.py
src/navigate/view/custom_widgets/hoverbar.py
src/navigate/view/custom_widgets/hovermixin.py
src/navigate/view/custom_widgets/popup.py
src/navigate/view/custom_widgets/scrollbars.py
src/navigate/view/custom_widgets/validation.py
src/navigate/view/icon/mic.ico
src/navigate/view/icon/mic.png
src/navigate/view/icon/mic_orig.png
src/navigate/view/icon/splash_screen_image.png
src/navigate/view/main_window_content/__init__.py
src/navigate/view/main_window_content/acquire_notebook.py
src/navigate/view/main_window_content/camera_tab.py
src/navigate/view/main_window_content/channels_tab.py
src/navigate/view/main_window_content/display_notebook.py
src/navigate/view/main_window_content/menus.py
src/navigate/view/main_window_content/multiposition_tab.py
src/navigate/view/main_window_content/settings_notebook.py
src/navigate/view/main_window_content/stage_tab.py
src/navigate/view/main_window_content/images/greydown.png
src/navigate/view/main_window_content/images/greydown_disabled.png
src/navigate/view/main_window_content/images/greyleft.png
src/navigate/view/main_window_content/images/greyleft_disabled.png
src/navigate/view/main_window_content/images/greyright.png
src/navigate/view/main_window_content/images/greyright_disabled.png
src/navigate/view/main_window_content/images/greyup.png
src/navigate/view/main_window_content/images/greyup_disabled.png
src/navigate/view/main_window_content/images/wa_right.png
src/navigate/view/popups/__init__.py
src/navigate/view/popups/acquire_popup.py
src/navigate/view/popups/adaptiveoptics_popup.py
src/navigate/view/popups/autofocus_setting_popup.py
src/navigate/view/popups/camera_map_setting_popup.py
src/navigate/view/popups/camera_view_popup_window.py
src/navigate/view/popups/feature_list_popup.py
src/navigate/view/popups/ilastik_setting_popup.py
src/navigate/view/popups/microscope_setting_popup_window.py
src/navigate/view/popups/plugins_popup.py
src/navigate/view/popups/tiling_wizard_popup.py
src/navigate/view/popups/tiling_wizard_popup2.py
src/navigate/view/popups/waveform_parameter_popup_window.py
src/navigate_micro.egg-info/PKG-INFO
src/navigate_micro.egg-info/SOURCES.txt
src/navigate_micro.egg-info/dependency_links.txt
src/navigate_micro.egg-info/entry_points.txt
src/navigate_micro.egg-info/requires.txt
src/navigate_micro.egg-info/top_level.txt
test/test_commit.py
test/test_main.py