MANIFEST.in
README.rst
setup.py
napa/__init__.py
napa/run_napa.py
napa.egg-info/PKG-INFO
napa.egg-info/SOURCES.txt
napa.egg-info/dependency_links.txt
napa.egg-info/requires.txt
napa.egg-info/top_level.txt
napa.egg-info/zip-safe
napa/analyze/__init__.py
napa/analyze/aln_mut_pairs.py
napa/analyze/net_analysis.py
napa/analyze/phylo_mut_pairs.py
napa/mutpair/__init__.py
napa/mutpair/aln.py
napa/mutpair/phylo.py
napa/net/__init__.py
napa/net/community_louvain.py
napa/net/net.py
napa/phylo/__init__.py
napa/phylo/edge.py
napa/phylo/tree.py
napa/seq/__init__.py
napa/seq/bioseq.py
napa/seq/format.py
napa/seq/parse.py
napa/utils/__init__.py
napa/utils/config.py
napa/utils/io.py
napa/utils/serials.py