LICENSE.txt
MANIFEST.in
README.rst
setup.cfg
setup.py
NanoSim_H.egg-info/PKG-INFO
NanoSim_H.egg-info/SOURCES.txt
NanoSim_H.egg-info/dependency_links.txt
NanoSim_H.egg-info/entry_points.txt
NanoSim_H.egg-info/requires.txt
NanoSim_H.egg-info/top_level.txt
nanosimh/__init__.py
nanosimh/besthit_to_histogram.py
nanosimh/get_besthit.py
nanosimh/head_align_tail_dist.py
nanosimh/misc.py
nanosimh/mixed_models.py
nanosimh/model_fitting.R
nanosimh/simulate.py
nanosimh/train.py
nanosimh/version.py
nanosimh/profiles/ecoli_R7/align_ratio
nanosimh/profiles/ecoli_R7/aligned_length_ecdf
nanosimh/profiles/ecoli_R7/aligned_reads_ecdf
nanosimh/profiles/ecoli_R7/del.hist
nanosimh/profiles/ecoli_R7/error_markov_model
nanosimh/profiles/ecoli_R7/first_match.hist
nanosimh/profiles/ecoli_R7/ht_ratio
nanosimh/profiles/ecoli_R7/ins.hist
nanosimh/profiles/ecoli_R7/match.hist
nanosimh/profiles/ecoli_R7/match_markov_model
nanosimh/profiles/ecoli_R7/mis.hist
nanosimh/profiles/ecoli_R7/model_profile
nanosimh/profiles/ecoli_R7/unaligned_length_ecdf
nanosimh/profiles/ecoli_R7.3/align_ratio
nanosimh/profiles/ecoli_R7.3/aligned_length_ecdf
nanosimh/profiles/ecoli_R7.3/aligned_reads_ecdf
nanosimh/profiles/ecoli_R7.3/del.hist
nanosimh/profiles/ecoli_R7.3/error_markov_model
nanosimh/profiles/ecoli_R7.3/first_match.hist
nanosimh/profiles/ecoli_R7.3/ht_ratio
nanosimh/profiles/ecoli_R7.3/ins.hist
nanosimh/profiles/ecoli_R7.3/match.hist
nanosimh/profiles/ecoli_R7.3/match_markov_model
nanosimh/profiles/ecoli_R7.3/mis.hist
nanosimh/profiles/ecoli_R7.3/model_profile
nanosimh/profiles/ecoli_R7.3/unaligned_length_ecdf
nanosimh/profiles/ecoli_R9_1D/align_ratio
nanosimh/profiles/ecoli_R9_1D/aligned_length_ecdf
nanosimh/profiles/ecoli_R9_1D/aligned_reads_ecdf
nanosimh/profiles/ecoli_R9_1D/del.hist
nanosimh/profiles/ecoli_R9_1D/error_markov_model
nanosimh/profiles/ecoli_R9_1D/first_match.hist
nanosimh/profiles/ecoli_R9_1D/ht_ratio
nanosimh/profiles/ecoli_R9_1D/ins.hist
nanosimh/profiles/ecoli_R9_1D/match.hist
nanosimh/profiles/ecoli_R9_1D/match_markov_model
nanosimh/profiles/ecoli_R9_1D/mis.hist
nanosimh/profiles/ecoli_R9_1D/model_profile
nanosimh/profiles/ecoli_R9_1D/unaligned_length_ecdf
nanosimh/profiles/ecoli_R9_2D/align_ratio
nanosimh/profiles/ecoli_R9_2D/aligned_length_ecdf
nanosimh/profiles/ecoli_R9_2D/aligned_reads_ecdf
nanosimh/profiles/ecoli_R9_2D/del.hist
nanosimh/profiles/ecoli_R9_2D/error_markov_model
nanosimh/profiles/ecoli_R9_2D/first_match.hist
nanosimh/profiles/ecoli_R9_2D/ht_ratio
nanosimh/profiles/ecoli_R9_2D/ins.hist
nanosimh/profiles/ecoli_R9_2D/match.hist
nanosimh/profiles/ecoli_R9_2D/match_markov_model
nanosimh/profiles/ecoli_R9_2D/mis.hist
nanosimh/profiles/ecoli_R9_2D/model_profile
nanosimh/profiles/ecoli_R9_2D/unaligned_length_ecdf
nanosimh/profiles/ecoli_UCSC1b/align_ratio
nanosimh/profiles/ecoli_UCSC1b/aligned_length_ecdf
nanosimh/profiles/ecoli_UCSC1b/aligned_reads_ecdf
nanosimh/profiles/ecoli_UCSC1b/del.hist
nanosimh/profiles/ecoli_UCSC1b/error_markov_model
nanosimh/profiles/ecoli_UCSC1b/first_match.hist
nanosimh/profiles/ecoli_UCSC1b/ht_ratio
nanosimh/profiles/ecoli_UCSC1b/ins.hist
nanosimh/profiles/ecoli_UCSC1b/match.hist
nanosimh/profiles/ecoli_UCSC1b/match_markov_model
nanosimh/profiles/ecoli_UCSC1b/mis.hist
nanosimh/profiles/ecoli_UCSC1b/model_profile
nanosimh/profiles/ecoli_UCSC1b/unaligned_length_ecdf
nanosimh/profiles/yeast/align_ratio
nanosimh/profiles/yeast/aligned_length_ecdf
nanosimh/profiles/yeast/aligned_reads_ecdf
nanosimh/profiles/yeast/del.hist
nanosimh/profiles/yeast/error_markov_model
nanosimh/profiles/yeast/first_match.hist
nanosimh/profiles/yeast/ht_ratio
nanosimh/profiles/yeast/ins.hist
nanosimh/profiles/yeast/match.hist
nanosimh/profiles/yeast/match_markov_model
nanosimh/profiles/yeast/mis.hist
nanosimh/profiles/yeast/model_profile
nanosimh/profiles/yeast/unaligned_length_ecdf