README.md
pyproject.toml
src/nanophaser/__init__.py
src/nanophaser/cli.py
src/nanophaser/hapcon_lib.py
src/nanophaser/longshot_lib.py
src/nanophaser/phaser_lib.py
src/nanophaser/run_blast.py
src/nanophaser/run_minimap.py
src/nanophaser/utils.py
src/nanophaser/whatshap_lib.py
src/nanophaser.egg-info/PKG-INFO
src/nanophaser.egg-info/SOURCES.txt
src/nanophaser.egg-info/dependency_links.txt
src/nanophaser.egg-info/entry_points.txt
src/nanophaser.egg-info/requires.txt
src/nanophaser.egg-info/top_level.txt
src/nanophaser/data/bola-original-alleles.fa
src/nanophaser/data/bola-original-alleles.fa.fai
src/nanophaser/data/bola-truncated-allele.fasta
src/nanophaser/data/bola_genome.fa
src/nanophaser/data/bola_genome.fa.fai
src/nanophaser/data/eval_genome.fa
src/nanophaser/data/test_reads.fq.gz