Metadata-Version: 1.1
Name: nanopack
Version: 0.1.2
Summary: Install all Oxford Nanopore scrips and modules for processing and analysis
Home-page: https://github.com/wdecoster/nanopack
Author: Wouter De Coster
Author-email: decosterwouter@gmail.com
License: MIT
Description: NANOPACK
        ========
        
        Easily install all my Oxford Nanopore processing and analysis scripts at
        the same time.
        
        Installation
        ------------
        
        ``pip install nanopack`` ## Updating ``pip install nanopack --upgrade``
        
        Scripts
        -------
        
        **`NanoPlot <https://github.com/wdecoster/NanoPlot>`__**: creating many
        relevant plots derived from reads (fastq), alignments (bam) and albacore
        summary files. Examples can be found in `the gallery on my
        blog <https://gigabaseorgigabyte.wordpress.com/2017/06/01/example-gallery-of-nanoplot/>`__.
        
        **`NanoFilt <https://github.com/wdecoster/nanofilt>`__**: Streaming
        script for filtering a fastq file based on a minimum length and minimum
        quality cut-off. Also trimming nucleotides from either read ends is an
        option.
        
        **`NanoStat <https://github.com/wdecoster/nanostat>`__**: Quickly create
        a statistical summary from reads, an alignment or a summary file
        
        **`NanoLyse <https://github.com/wdecoster/nanolyse>`__**: Streaming
        script for filtering a fastq file to remove reads mapping to the lambda
        phage genome (control DNA used in nanopore sequencing). Uses
        `minimap2/mappy <https://github.com/lh3/minimap2>`__.
        
        Modules
        -------
        
        **`nanoget <https://github.com/wdecoster/nanoget>`__**: Functions for
        extracting features from reads, alignments and albacore summary data.
        
        **`nanomath <https://github.com/wdecoster/nanomath>`__**: Functions for
        mathematical processing and calculating statistics
        
        **`nanoplotter <https://github.com/wdecoster/nanoplotter>`__**:
        Appropriate plotting functions, heavily using the seaborn module
        
Keywords: nanopore sequencing processing analysis
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
