LICENSE
README.md
setup.py
nanomotif/__init__.py
nanomotif/_version.py
nanomotif/argparser.py
nanomotif/bin_consensus.py
nanomotif/candidate.py
nanomotif/constants.py
nanomotif/dataload.py
nanomotif/datasets.py
nanomotif/evaluate.py
nanomotif/feature.py
nanomotif/logger.py
nanomotif/main.py
nanomotif/model.py
nanomotif/old_search_method.py
nanomotif/parallel.py
nanomotif/postprocess.py
nanomotif/scoremotifs.py
nanomotif/seed.py
nanomotif/seq.py
nanomotif/utils.py
nanomotif.egg-info/PKG-INFO
nanomotif.egg-info/SOURCES.txt
nanomotif.egg-info/dependency_links.txt
nanomotif.egg-info/entry_points.txt
nanomotif.egg-info/not-zip-safe
nanomotif.egg-info/requires.txt
nanomotif.egg-info/top_level.txt
nanomotif/binnary/__init__.py
nanomotif/binnary/data_processing.py
nanomotif/binnary/detect_contamination.py
nanomotif/binnary/include_contigs.py
nanomotif/binnary/logging.py
nanomotif/binnary/utils.py
nanomotif/datasets/e_coli_assembly.polished.fasta
nanomotif/datasets/e_coli_bin-motifs.tsv
nanomotif/datasets/e_coli_contig-bin.tsv
nanomotif/datasets/geobacillus-contig-bin.tsv
nanomotif/datasets/geobacillus-plasmids.assembly.fasta
nanomotif/datasets/geobacillus-plasmids.motifs-scored.tsv
nanomotif/datasets/geobacillus-plasmids.motifs.tsv
nanomotif/datasets/geobacillus-plasmids.pileup.bed
nanomotif/mtase_linker/MTase_linker.smk
nanomotif/mtase_linker/__init__.py
nanomotif/mtase_linker/command.py
nanomotif/mtase_linker/dependencies.py
nanomotif/mtase_linker/setup.smk
nanomotif/mtase_linker/envs/blast-2.14.1.yaml
nanomotif/mtase_linker/envs/defensefinder-1.2.0.yaml
nanomotif/mtase_linker/envs/prodigal-2.6.3.yaml
nanomotif/mtase_linker/envs/python_env-3.12.0.yaml
nanomotif/mtase_linker/src/blastp_processing.py
nanomotif/mtase_linker/src/extract_MTase_genes.py
nanomotif/mtase_linker/src/mod_typing.py
nanomotif/mtase_linker/src/motif_assignment.py
nanomotif/mtase_linker/src/utillities.py
tests/__init__.py
tests/test_candidate.py
tests/test_cli_commands.py
tests/test_dataload.py
tests/test_motif_find.py
tests/test_motif_score.py
tests/binnary/__init__.py
tests/binnary/conftest.py
tests/binnary/test_data_processing_functions.py
tests/binnary/test_detect_contamination.py
tests/binnary/test_generate_output.py
tests/binnary/test_include_contigs.py
tests/binnary/test_utils.py
tests/binnary/test_write_bins.py