LICENSE
README.md
pyproject.toml
bk/setup.py
misc/add_simple_repeat.py
misc/connect.py
misc/get_edge.py
misc/post_filter_by_v0.3.py
misc/sv_type.py
misc/subscript_postprocess_sbnd/add_simple_repeat.py
misc/subscript_postprocess_sbnd/add_simple_repeat_sbnd.py
misc/subscript_postprocess_sbnd/integrate_sbnd.py
nanomonsv/__init__.py
nanomonsv/arg_parser.py
nanomonsv/cluster.py
nanomonsv/cluster_sbnd.py
nanomonsv/connect.py
nanomonsv/count_sread_by_alignment.py
nanomonsv/filt.py
nanomonsv/gather_support_read_seq.py
nanomonsv/generate_consensus.py
nanomonsv/insert_classify.py
nanomonsv/locate_bp.py
nanomonsv/locate_bp_sbnd.py
nanomonsv/logger.py
nanomonsv/long_read_validate.py
nanomonsv/merge_control.py
nanomonsv/my_seq.py
nanomonsv/parse.py
nanomonsv/post_proc.py
nanomonsv/pyssw.py
nanomonsv/run.py
nanomonsv/smith_waterman.py
nanomonsv/ssw_lib.py
nanomonsv/swalign.py
nanomonsv/utils.py
nanomonsv/vcf_convert.py
nanomonsv/version.py
nanomonsv.egg-info/PKG-INFO
nanomonsv.egg-info/SOURCES.txt
nanomonsv.egg-info/dependency_links.txt
nanomonsv.egg-info/entry_points.txt
nanomonsv.egg-info/requires.txt
nanomonsv.egg-info/top_level.txt
nanomonsv/data/LINE1.hg19.bed.gz
nanomonsv/data/LINE1.hg19.bed.gz.tbi
nanomonsv/data/LINE1.hg38.bed.gz
nanomonsv/data/LINE1.hg38.bed.gz.tbi
resource/LINE1_db/subscript/mod_label.py
resource/LINE1_db/subscript/proc_1000genomes.py
resource/LINE1_db/subscript/proc_gnomad.py
resource/LINE1_db/subscript/proc_rmsk.py
resource/LINE1_db/subscript/proc_rmsk_chm13.py
tests/test_main.py