LICENSE
README.md
pyproject.toml
setup.cfg
src/plot_figure.py
src/nanocompare/__init__.py
src/nanocompare/benchmarkingDataConstruct.py
src/nanocompare/computeRawReadsCoverage.py
src/nanocompare/eval_common.py
src/nanocompare/global_config.py
src/nanocompare/global_settings.py
src/nanocompare/read_level_eval.py
src/nanocompare/site_level_eval.py
src/nanocompare/tss_eval.py
src/nanocompare/report/__init__.py
src/nanocompare/report/gen_html_report.py
src/nanocompare/resource/__init__.py
src/nanocompare/resource/resource_summary.py
src/nanocompare/utils/__init__.py
src/nanocompare/utils/combine_output_na12878.py
src/nanocompare/utils/distribution_influnce_genomic_context.py
src/nanocompare/utils/meth_stats_tool.py
src/nanocompare/utils/nanopore_data_longread_portion_stats.py
src/nanocompare/utils/parse_urls_input_na12878.py
src/nanocompare/utils/saniti-ecoli/__init__.py
src/nanocompare/utils/saniti-ecoli/sanity_check_deepmod.py
src/nanocompare/utils/saniti-ecoli/sanity_meteore_deepmod.py
src/nanocompare/utils/sanity_5hmc/__init__.py
src/nanocompare/utils/sanity_5hmc/sanity_check_5hmc.py
src/nanome_jax.egg-info/PKG-INFO
src/nanome_jax.egg-info/SOURCES.txt
src/nanome_jax.egg-info/dependency_links.txt
src/nanome_jax.egg-info/requires.txt
src/nanome_jax.egg-info/top_level.txt
utils/FilesSeparator.py
utils/clean_old_basecall_in_fast5.py
utils/combination_model_prediction.py
utils/extract_methylation_fast5_support_dir.py
utils/gen_readme.py
utils/hm_cluster_predict.py
utils/sum_chr_mod.py
utils/tombo_extract_per_read_stats.py