Metadata-Version: 1.2
Name: nanomath
Version: 0.16.2
Summary: A few simple math function for other Oxford Nanopore processing scripts
Home-page: https://github.com/wdecoster/nanomath
Author: Wouter De Coster
Author-email: decosterwouter@gmail.com
License: MIT
Description-Content-Type: UNKNOWN
Description: nanomath
        ========
        
        This module provides a few simple math and statistics functions for
        other scripts processing Oxford Nanopore sequencing data
        
        |Twitter URL| |install with conda| |Build Status| |Code Health|
        
        FUNCTIONS
        ---------
        
        -  Calculate read N50 from a set of lengths ``get_N50(readlenghts)``
        -  Remove extreme length outliers from a dataset
           ``remove_length_outliers(dataframe, columname)``
        -  Calculate the average Phred quality of a read
           ``ave_qual(qualscores)``
        -  Write out the statistics report after calling readstats function
           ``write_stats(dataframe, outputname)``
        -  Compute a number of statistics, return a dictionary
           ``calc_read_stats(dataframe)``
        
        INSTALLATION
        ------------
        
        .. code:: bash
        
            pip install nanomath
        
        | or
        | |install with conda|
        
        ::
        
            conda install -c bioconda nanomath
        
        STATUS
        ------
        
        |Build Status| |Code Health|
        
        .. |Twitter URL| image:: https://img.shields.io/twitter/url/https/twitter.com/wouter_decoster.svg?style=social&label=Follow%20%40wouter_decoster
           :target: https://twitter.com/wouter_decoster
        .. |install with conda| image:: https://anaconda.org/bioconda/nanomath/badges/installer/conda.svg
           :target: https://anaconda.org/bioconda/nanomath
        .. |Build Status| image:: https://travis-ci.org/wdecoster/nanomath.svg?branch=master
           :target: https://travis-ci.org/wdecoster/nanomath
        .. |Code Health| image:: https://landscape.io/github/wdecoster/nanomath/master/landscape.svg?style=flat
           :target: https://landscape.io/github/wdecoster/nanomath/master
        
Keywords: nanopore sequencing plotting quality control
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Requires-Python: >=3
