Metadata-Version: 1.1
Name: nanomath
Version: 0.12.4
Summary: A few simple math function for other Oxford Nanopore processing scripts
Home-page: https://github.com/wdecoster/nanomath
Author: Wouter De Coster
Author-email: decosterwouter@gmail.com
License: MIT
Description: nanomath
        ========
        
        This module provides a few simple math and statistics functions for
        other scripts processing Oxford Nanopore sequencing data
        
        | This includes the following functions:
        | \* Calculate read N50 from a set of lengths ``getN50(readlenghts)``
        | \* Remove extreme length outliers from a dataset
          ``removeLengthOutliers(dataframe, columname)``
        | \* Calculate the average Phred quality of a read
          ``aveQual(qualscores)``
        | \* Write out the statistics report after calling readstats function
          ``writeStats(dataframe, outputname)``
        | \* Compute a number of statistics, return a dictionary
          ``readstats(dataframe)``
        
Keywords: nanopore sequencing plotting quality control
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
