Metadata-Version: 2.1
Name: named_arrays
Version: 0.2.2
Summary: Numpy arrays with labeled axes, similar to xarray but with support for uncertainties
Author-email: "Roy T. Smart" <roytsmart@gmail.com>, "Jacob D. Parker" <jacobdparker@gmail.com>
Project-URL: Homepage, https://github.com/Kankelborg-Group/named_arrays
Project-URL: Documentation, https://named-arrays.readthedocs.io/en/latest
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.9
Description-Content-Type: text/markdown
Requires-Dist: typing_extensions
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: scipy
Requires-Dist: astropy
Provides-Extra: test
Requires-Dist: pytest; extra == "test"
Provides-Extra: doc
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# named_arrays

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`named_arrays` is an implementation of a [named tensor](https://nlp.seas.harvard.edu/NamedTensor), which assigns names to each axis of an n-dimensional array such as a numpy array.

When using a numpy array, we often have to insert singleton dimensions to align axes before using binary operators etc.
This is not necessary when using a named tensor implementation such as `xarray` or `named_arrays`, axes are aligned automatically using their names.

## Installation
`named_arrays` is available on PyPi and can be installed using pip
```bash
pip install named-arrays
```

## Examples

### ScalarArray
The fundamental type of `named_arrays` is the [`ScalarArray`](https://named-arrays.readthedocs.io/en/latest/_autosummary/named_arrays.ScalarArray.html), which is a composition of a numpy ndarray-like object and a tuple of axis names which must have the same length as the number of dimensions in the array.


```python
import numpy as np
import named_arrays as na

a = na.ScalarArray(np.array([1, 2, 3]), axes=('x',))
```

If we create another array with a different axis name, it will be broadcasted automatically against the first array if we add them together


```python
b = na.ScalarArray(np.array([4, 5]), axes=('y',))
c = a + b
c
```




    ScalarArray(
        ndarray=[[5, 6],
                 [6, 7],
                 [7, 8]],
        axes=('x', 'y'),
    )



All the usual numpy reduction operations use the axis name instead of the axis index


```python
c.mean('x')
```




    ScalarArray(
        ndarray=[6., 7.],
        axes=('y',),
    )



To index the array we can use a dictionary with the axis names as the keys


```python
c[dict(x=0)]
```




    ScalarArray(
        ndarray=[5, 6],
        axes=('y',),
    )



### ScalarLinearSpace
We recommend that you rarely directly create instances of [`ScalarArray`](https://named-arrays.readthedocs.io/en/latest/_autosummary/named_arrays.ScalarArray.html) directly. Instead, you can use the implicit array classes: [`ScalarLinearSpace`](https://named-arrays.readthedocs.io/en/latest/_autosummary/named_arrays.ScalarLinearSpace.html), [`ScalarLogarithmicSpace`](https://named-arrays.readthedocs.io/en/latest/_autosummary/named_arrays.ScalarLogarithmicSpace.html), and [`ScalarGeometricSpace`](https://named-arrays.readthedocs.io/en/latest/_autosummary/named_arrays.ScalarGeometricSpace.html) to create arrays in a similar fashion to [`numpy.linspace()`](https://numpy.org/doc/stable/reference/generated/numpy.linspace.html), [`numpy.logspace()`](https://numpy.org/doc/stable/reference/generated/numpy.logspace.html#numpy.logspace), and [`numpy.geomspace()`](https://numpy.org/doc/stable/reference/generated/numpy.geomspace.html#numpy.geomspace) with the advantage of being able to access the inputs to these functions at a later point.


```python
d = na.ScalarLinearSpace(0, 1, axis='z', num=4)
d
```




    ScalarLinearSpace(start=0, stop=1, axis='z', num=4, endpoint=True)



Thses implicit array classes work just like `ScalarArray` and can be used with any of the usual array operations.


```python
a + d
```




    ScalarArray(
        ndarray=[[1.        , 1.33333333, 1.66666667, 2.        ],
                 [2.        , 2.33333333, 2.66666667, 3.        ],
                 [3.        , 3.33333333, 3.66666667, 4.        ]],
        axes=('x', 'z'),
    )




```python

```
